Results 61 - 80 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25637 | 5' | -54 | NC_005337.1 | + | 7836 | 0.69 | 0.864246 |
Target: 5'- -gCGCGCGGUgguacacgcgCACGcgCGCCGUCGc- -3' miRNA: 3'- ugGUGCGCUA----------GUGCaaGCGGCAGUac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 94620 | 0.69 | 0.864246 |
Target: 5'- gGCCACGCGccccaCGCGgccgCGCCGcugCGUGu -3' miRNA: 3'- -UGGUGCGCua---GUGCaa--GCGGCa--GUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 95118 | 0.69 | 0.85648 |
Target: 5'- cGCU-CGCGGUCguccuccaGCG-UCGCCGUCAUa -3' miRNA: 3'- -UGGuGCGCUAG--------UGCaAGCGGCAGUAc -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 48468 | 0.69 | 0.85648 |
Target: 5'- uACCAgGCGcucucguUCugGUUccugaagucugaCGCCGUCGUGa -3' miRNA: 3'- -UGGUgCGCu------AGugCAA------------GCGGCAGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 91891 | 0.69 | 0.851719 |
Target: 5'- cGCCGCGgcgccuccgggucgcCGGUCACGacgugcgUCGCCG-CGUGg -3' miRNA: 3'- -UGGUGC---------------GCUAGUGCa------AGCGGCaGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 9195 | 0.69 | 0.854901 |
Target: 5'- gGCCACGCGGUCGCGgacccagaaCCgGUCGUa -3' miRNA: 3'- -UGGUGCGCUAGUGCaagc-----GG-CAGUAc -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 111001 | 0.69 | 0.831951 |
Target: 5'- cACCAuCGCGAUUuaagggccguaACGUgcCGCCGUCAc- -3' miRNA: 3'- -UGGU-GCGCUAG-----------UGCAa-GCGGCAGUac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 105404 | 0.69 | 0.831951 |
Target: 5'- gACCACuCGcgCGCGcugaUCGCCGUCGg- -3' miRNA: 3'- -UGGUGcGCuaGUGCa---AGCGGCAGUac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 47314 | 0.69 | 0.864246 |
Target: 5'- -gCGCGUGGUCAUGUUCgaggcgcgcGUgGUCAUGg -3' miRNA: 3'- ugGUGCGCUAGUGCAAG---------CGgCAGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 110963 | 0.69 | 0.840325 |
Target: 5'- aGCUGCGCGGcCGCG-UCGaCGUCGUGc -3' miRNA: 3'- -UGGUGCGCUaGUGCaAGCgGCAGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 97418 | 0.7 | 0.787438 |
Target: 5'- aACCGCGUGGUCaACGUgucCGUgGUCAg- -3' miRNA: 3'- -UGGUGCGCUAG-UGCAa--GCGgCAGUac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 88445 | 0.7 | 0.778067 |
Target: 5'- -aCGCGcCGGUCGCGgaacaCGCCGUCGa- -3' miRNA: 3'- ugGUGC-GCUAGUGCaa---GCGGCAGUac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 38655 | 0.7 | 0.787438 |
Target: 5'- gGCC-CGCGccCACGgaCGCCGcCAUGg -3' miRNA: 3'- -UGGuGCGCuaGUGCaaGCGGCaGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 34905 | 0.7 | 0.778067 |
Target: 5'- uGCCGCGCGucCACGggCGUCaaGUCAUGc -3' miRNA: 3'- -UGGUGCGCuaGUGCaaGCGG--CAGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 118763 | 0.7 | 0.813766 |
Target: 5'- uGCUGCGCGAcgUCcuagaugacgccgGCGgcggCGCCGUCGUGc -3' miRNA: 3'- -UGGUGCGCU--AG-------------UGCaa--GCGGCAGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 120922 | 0.7 | 0.787438 |
Target: 5'- cGCCGCGUGucccggCGCGUgcccguUCGUgGUCAUGg -3' miRNA: 3'- -UGGUGCGCua----GUGCA------AGCGgCAGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 5988 | 0.7 | 0.796665 |
Target: 5'- gGCCAgGCGcgCGCGUUgcagacCGCCG-CGUGc -3' miRNA: 3'- -UGGUgCGCuaGUGCAA------GCGGCaGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 3360 | 0.7 | 0.805738 |
Target: 5'- gGCCAUGUGGUaCAUG-UCGUCGUuCGUGg -3' miRNA: 3'- -UGGUGCGCUA-GUGCaAGCGGCA-GUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 36895 | 0.7 | 0.805738 |
Target: 5'- uUCGCGCGG-CGCGgcgUgGCCGUCAg- -3' miRNA: 3'- uGGUGCGCUaGUGCa--AgCGGCAGUac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 95186 | 0.7 | 0.81465 |
Target: 5'- cGCCACgGCGAcCACGaugUCGCCcaucugGUCGUGc -3' miRNA: 3'- -UGGUG-CGCUaGUGCa--AGCGG------CAGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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