miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25637 5' -54 NC_005337.1 + 56276 1.07 0.005581
Target:  5'- uACCACGCGAUCACGUUCGCCGUCAUGc -3'
miRNA:   3'- -UGGUGCGCUAGUGCAAGCGGCAGUAC- -5'
25637 5' -54 NC_005337.1 + 65919 0.81 0.253497
Target:  5'- uCCACGCGAUCGCGaccgCGCCGUCc-- -3'
miRNA:   3'- uGGUGCGCUAGUGCaa--GCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 72364 0.76 0.494606
Target:  5'- uCCGCGCGAUCGCGcggacggccgUCGCgGUCAg- -3'
miRNA:   3'- uGGUGCGCUAGUGCa---------AGCGgCAGUac -5'
25637 5' -54 NC_005337.1 + 101166 0.75 0.544323
Target:  5'- gACCuACGCGAUCACGUuccgcgugaUCGCCG-CGa- -3'
miRNA:   3'- -UGG-UGCGCUAGUGCA---------AGCGGCaGUac -5'
25637 5' -54 NC_005337.1 + 50977 0.75 0.534235
Target:  5'- gACCGgGCGGggcgccgCGCGUUCGUCGUCGg- -3'
miRNA:   3'- -UGGUgCGCUa------GUGCAAGCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 82259 0.75 0.504394
Target:  5'- gACCGCGCGcgCGCGgcCGuCCGUCAc- -3'
miRNA:   3'- -UGGUGCGCuaGUGCaaGC-GGCAGUac -5'
25637 5' -54 NC_005337.1 + 86238 0.74 0.595554
Target:  5'- uCCGCGCGu---CGUUCGCCGcCGUGu -3'
miRNA:   3'- uGGUGCGCuaguGCAAGCGGCaGUAC- -5'
25637 5' -54 NC_005337.1 + 88047 0.74 0.564677
Target:  5'- cGCCACGCuGAUCGCGUacgUGCuCGUCGg- -3'
miRNA:   3'- -UGGUGCG-CUAGUGCAa--GCG-GCAGUac -5'
25637 5' -54 NC_005337.1 + 69004 0.74 0.595554
Target:  5'- uCCGCGCGAUCGC---CGCCGcCGUGu -3'
miRNA:   3'- uGGUGCGCUAGUGcaaGCGGCaGUAC- -5'
25637 5' -54 NC_005337.1 + 16930 0.73 0.62668
Target:  5'- uCCACGCGGcCgACGUUgGCCGUCGc- -3'
miRNA:   3'- uGGUGCGCUaG-UGCAAgCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 9152 0.72 0.709231
Target:  5'- cGCUugGCGGUCGCuagccUCGUCGUCAg- -3'
miRNA:   3'- -UGGugCGCUAGUGca---AGCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 105224 0.72 0.688812
Target:  5'- aGCUGCGCGcUCGCGggCGCCcggcUCAUGg -3'
miRNA:   3'- -UGGUGCGCuAGUGCaaGCGGc---AGUAC- -5'
25637 5' -54 NC_005337.1 + 8955 0.72 0.688812
Target:  5'- gGCCGCGU--UCACGUUUGCgccugcggCGUCAUGa -3'
miRNA:   3'- -UGGUGCGcuAGUGCAAGCG--------GCAGUAC- -5'
25637 5' -54 NC_005337.1 + 76708 0.72 0.678525
Target:  5'- uCCACGUGGUCGcCGUcCaCCGUCAUGu -3'
miRNA:   3'- uGGUGCGCUAGU-GCAaGcGGCAGUAC- -5'
25637 5' -54 NC_005337.1 + 87448 0.72 0.668199
Target:  5'- -aCACGCGGcUCACc-UCGCCGUCGUa -3'
miRNA:   3'- ugGUGCGCU-AGUGcaAGCGGCAGUAc -5'
25637 5' -54 NC_005337.1 + 130090 0.72 0.709231
Target:  5'- gACCACcCGGUgAUGgaggaCGCCGUCAUGg -3'
miRNA:   3'- -UGGUGcGCUAgUGCaa---GCGGCAGUAC- -5'
25637 5' -54 NC_005337.1 + 74572 0.72 0.719345
Target:  5'- gGCCGCGCGG-CACGcggacgCGCUGUCGc- -3'
miRNA:   3'- -UGGUGCGCUaGUGCaa----GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 95765 0.71 0.75893
Target:  5'- cCC-CGCGAUCGCGgcgaCGUCGUCGg- -3'
miRNA:   3'- uGGuGCGCUAGUGCaa--GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 28493 0.71 0.768561
Target:  5'- gGCCGCGCGGcgCGCGgUCGCgCGgcacugCGUGg -3'
miRNA:   3'- -UGGUGCGCUa-GUGCaAGCG-GCa-----GUAC- -5'
25637 5' -54 NC_005337.1 + 97418 0.7 0.787438
Target:  5'- aACCGCGUGGUCaACGUgucCGUgGUCAg- -3'
miRNA:   3'- -UGGUGCGCUAG-UGCAa--GCGgCAGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.