Results 41 - 60 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25637 | 5' | -54 | NC_005337.1 | + | 34580 | 0.69 | 0.864246 |
Target: 5'- gGCCGCGCGcagCGCGUcgaaGCUGUCGc- -3' miRNA: 3'- -UGGUGCGCua-GUGCAag--CGGCAGUac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 74486 | 0.69 | 0.848503 |
Target: 5'- gGCCuCGUGGUCGCGUgccggCGCCGg---- -3' miRNA: 3'- -UGGuGCGCUAGUGCAa----GCGGCaguac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 110963 | 0.69 | 0.840325 |
Target: 5'- aGCUGCGCGGcCGCG-UCGaCGUCGUGc -3' miRNA: 3'- -UGGUGCGCUaGUGCaAGCgGCAGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 111001 | 0.69 | 0.831951 |
Target: 5'- cACCAuCGCGAUUuaagggccguaACGUgcCGCCGUCAc- -3' miRNA: 3'- -UGGU-GCGCUAG-----------UGCAa-GCGGCAGUac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 33012 | 0.68 | 0.886229 |
Target: 5'- gGCCGCGaucuUCGCGUccgCGCCGUCc-- -3' miRNA: 3'- -UGGUGCgcu-AGUGCAa--GCGGCAGuac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 130021 | 0.68 | 0.886229 |
Target: 5'- aAUCACGCGGcCGCGgUCGCCG-CGc- -3' miRNA: 3'- -UGGUGCGCUaGUGCaAGCGGCaGUac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 103202 | 0.68 | 0.886229 |
Target: 5'- aACCcCGCGAUCGUGgaCGCCuUCGUGc -3' miRNA: 3'- -UGGuGCGCUAGUGCaaGCGGcAGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 128482 | 0.68 | 0.879126 |
Target: 5'- gACCGCGUGcUCGCGggCGUgCGUCGc- -3' miRNA: 3'- -UGGUGCGCuAGUGCaaGCG-GCAGUac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 87427 | 0.68 | 0.879126 |
Target: 5'- cGCCACGuCGuUCACGgucagcgucUUGCCGUCGcUGg -3' miRNA: 3'- -UGGUGC-GCuAGUGCa--------AGCGGCAGU-AC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 64928 | 0.68 | 0.871797 |
Target: 5'- cCCGCGCGGgaaaGCGcgCGCCGUgAUc -3' miRNA: 3'- uGGUGCGCUag--UGCaaGCGGCAgUAc -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 91581 | 0.68 | 0.893099 |
Target: 5'- cUCugGCGAUCACGgUC-CCGUCc-- -3' miRNA: 3'- uGGugCGCUAGUGCaAGcGGCAGuac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 100235 | 0.68 | 0.893099 |
Target: 5'- -gCGCGUGAUCGCGguccCGcCCGcCAUGa -3' miRNA: 3'- ugGUGCGCUAGUGCaa--GC-GGCaGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 117307 | 0.68 | 0.893099 |
Target: 5'- cGCgUACGCGAacacCGCGgggaUCGCCGUCAc- -3' miRNA: 3'- -UG-GUGCGCUa---GUGCa---AGCGGCAGUac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 76861 | 0.68 | 0.893099 |
Target: 5'- uCCACGUaGGcCGCGUgcgCGCuCGUCAUGc -3' miRNA: 3'- uGGUGCG-CUaGUGCAa--GCG-GCAGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 6655 | 0.68 | 0.899734 |
Target: 5'- cGCCGCGCGGUaCAa---CGCCGUCu-- -3' miRNA: 3'- -UGGUGCGCUA-GUgcaaGCGGCAGuac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 69722 | 0.68 | 0.886229 |
Target: 5'- gGCCACGCGGUCcAgGaaggUGCCGUCc-- -3' miRNA: 3'- -UGGUGCGCUAG-UgCaa--GCGGCAGuac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 84088 | 0.68 | 0.886229 |
Target: 5'- cGCCgcagaGCGCGGaCACGggcgcggUCGCCGUCu-- -3' miRNA: 3'- -UGG-----UGCGCUaGUGCa------AGCGGCAGuac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 39483 | 0.68 | 0.899734 |
Target: 5'- uGCCGCGCGAcgCGCGcgCGCUGcugcUgGUGa -3' miRNA: 3'- -UGGUGCGCUa-GUGCaaGCGGC----AgUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 45922 | 0.68 | 0.897769 |
Target: 5'- -gCGCGCGAagaagacggucuucUCGCGcgCGCCGgcgcgCGUGg -3' miRNA: 3'- ugGUGCGCU--------------AGUGCaaGCGGCa----GUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 38358 | 0.67 | 0.90613 |
Target: 5'- cGCgAgGCGcgCGCGgcCGCCGUCGc- -3' miRNA: 3'- -UGgUgCGCuaGUGCaaGCGGCAGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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