miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25637 5' -54 NC_005337.1 + 88445 0.7 0.778067
Target:  5'- -aCGCGcCGGUCGCGgaacaCGCCGUCGa- -3'
miRNA:   3'- ugGUGC-GCUAGUGCaa---GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 120309 0.7 0.778067
Target:  5'- gGCgGCGCGGUaCACGgUCGCCGacgggugCAUGc -3'
miRNA:   3'- -UGgUGCGCUA-GUGCaAGCGGCa------GUAC- -5'
25637 5' -54 NC_005337.1 + 34905 0.7 0.778067
Target:  5'- uGCCGCGCGucCACGggCGUCaaGUCAUGc -3'
miRNA:   3'- -UGGUGCGCuaGUGCaaGCGG--CAGUAC- -5'
25637 5' -54 NC_005337.1 + 97418 0.7 0.787438
Target:  5'- aACCGCGUGGUCaACGUgucCGUgGUCAg- -3'
miRNA:   3'- -UGGUGCGCUAG-UGCAa--GCGgCAGUac -5'
25637 5' -54 NC_005337.1 + 120922 0.7 0.787438
Target:  5'- cGCCGCGUGucccggCGCGUgcccguUCGUgGUCAUGg -3'
miRNA:   3'- -UGGUGCGCua----GUGCA------AGCGgCAGUAC- -5'
25637 5' -54 NC_005337.1 + 38655 0.7 0.787438
Target:  5'- gGCC-CGCGccCACGgaCGCCGcCAUGg -3'
miRNA:   3'- -UGGuGCGCuaGUGCaaGCGGCaGUAC- -5'
25637 5' -54 NC_005337.1 + 5988 0.7 0.796665
Target:  5'- gGCCAgGCGcgCGCGUUgcagacCGCCG-CGUGc -3'
miRNA:   3'- -UGGUgCGCuaGUGCAA------GCGGCaGUAC- -5'
25637 5' -54 NC_005337.1 + 36895 0.7 0.805738
Target:  5'- uUCGCGCGG-CGCGgcgUgGCCGUCAg- -3'
miRNA:   3'- uGGUGCGCUaGUGCa--AgCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 3360 0.7 0.805738
Target:  5'- gGCCAUGUGGUaCAUG-UCGUCGUuCGUGg -3'
miRNA:   3'- -UGGUGCGCUA-GUGCaAGCGGCA-GUAC- -5'
25637 5' -54 NC_005337.1 + 118763 0.7 0.813766
Target:  5'- uGCUGCGCGAcgUCcuagaugacgccgGCGgcggCGCCGUCGUGc -3'
miRNA:   3'- -UGGUGCGCU--AG-------------UGCaa--GCGGCAGUAC- -5'
25637 5' -54 NC_005337.1 + 95186 0.7 0.81465
Target:  5'- cGCCACgGCGAcCACGaugUCGCCcaucugGUCGUGc -3'
miRNA:   3'- -UGGUG-CGCUaGUGCa--AGCGG------CAGUAC- -5'
25637 5' -54 NC_005337.1 + 131168 0.7 0.819915
Target:  5'- gGCCGCggucGCGGUCGCGgagucgcuggccgUCGCCGagGUGc -3'
miRNA:   3'- -UGGUG----CGCUAGUGCa------------AGCGGCagUAC- -5'
25637 5' -54 NC_005337.1 + 105404 0.69 0.831951
Target:  5'- gACCACuCGcgCGCGcugaUCGCCGUCGg- -3'
miRNA:   3'- -UGGUGcGCuaGUGCa---AGCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 111001 0.69 0.831951
Target:  5'- cACCAuCGCGAUUuaagggccguaACGUgcCGCCGUCAc- -3'
miRNA:   3'- -UGGU-GCGCUAG-----------UGCAa-GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 110963 0.69 0.840325
Target:  5'- aGCUGCGCGGcCGCG-UCGaCGUCGUGc -3'
miRNA:   3'- -UGGUGCGCUaGUGCaAGCgGCAGUAC- -5'
25637 5' -54 NC_005337.1 + 74486 0.69 0.848503
Target:  5'- gGCCuCGUGGUCGCGUgccggCGCCGg---- -3'
miRNA:   3'- -UGGuGCGCUAGUGCAa----GCGGCaguac -5'
25637 5' -54 NC_005337.1 + 91891 0.69 0.851719
Target:  5'- cGCCGCGgcgccuccgggucgcCGGUCACGacgugcgUCGCCG-CGUGg -3'
miRNA:   3'- -UGGUGC---------------GCUAGUGCa------AGCGGCaGUAC- -5'
25637 5' -54 NC_005337.1 + 9195 0.69 0.854901
Target:  5'- gGCCACGCGGUCGCGgacccagaaCCgGUCGUa -3'
miRNA:   3'- -UGGUGCGCUAGUGCaagc-----GG-CAGUAc -5'
25637 5' -54 NC_005337.1 + 48468 0.69 0.85648
Target:  5'- uACCAgGCGcucucguUCugGUUccugaagucugaCGCCGUCGUGa -3'
miRNA:   3'- -UGGUgCGCu------AGugCAA------------GCGGCAGUAC- -5'
25637 5' -54 NC_005337.1 + 95118 0.69 0.85648
Target:  5'- cGCU-CGCGGUCguccuccaGCG-UCGCCGUCAUa -3'
miRNA:   3'- -UGGuGCGCUAG--------UGCaAGCGGCAGUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.