miRNA display CGI


Results 21 - 40 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25637 5' -54 NC_005337.1 + 38482 0.66 0.939369
Target:  5'- cGCCGgGCGcgCGCG-UCGCCGa---- -3'
miRNA:   3'- -UGGUgCGCuaGUGCaAGCGGCaguac -5'
25637 5' -54 NC_005337.1 + 58859 0.66 0.939369
Target:  5'- uUCGCGCGcUCGCG--CGCCGUCc-- -3'
miRNA:   3'- uGGUGCGCuAGUGCaaGCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 25106 0.66 0.939369
Target:  5'- cCCGCGCGG-CGCGgcgCGCgCGgacgCGUGa -3'
miRNA:   3'- uGGUGCGCUaGUGCaa-GCG-GCa---GUAC- -5'
25637 5' -54 NC_005337.1 + 75834 0.66 0.938887
Target:  5'- gUCAUGCGGUCGcCGUgaucgucUCGCCGcUCcgGa -3'
miRNA:   3'- uGGUGCGCUAGU-GCA-------AGCGGC-AGuaC- -5'
25637 5' -54 NC_005337.1 + 64330 0.67 0.934444
Target:  5'- cACCACGCGGa-GCGUggCGCCG-CGg- -3'
miRNA:   3'- -UGGUGCGCUagUGCAa-GCGGCaGUac -5'
25637 5' -54 NC_005337.1 + 84664 0.67 0.934444
Target:  5'- uCCGCGUGAUCugG-UCGUCGgacggggcCGUGu -3'
miRNA:   3'- uGGUGCGCUAGugCaAGCGGCa-------GUAC- -5'
25637 5' -54 NC_005337.1 + 106038 0.67 0.934444
Target:  5'- uGCCGCGCGAcgGCGUUuCGgUGaUCGUGu -3'
miRNA:   3'- -UGGUGCGCUagUGCAA-GCgGC-AGUAC- -5'
25637 5' -54 NC_005337.1 + 70157 0.67 0.934444
Target:  5'- cGCCAUGCGc-CGCGUgagccagGCCGUCGUc -3'
miRNA:   3'- -UGGUGCGCuaGUGCAag-----CGGCAGUAc -5'
25637 5' -54 NC_005337.1 + 95310 0.67 0.934444
Target:  5'- cGCgGCGCGcuGUUGCGcUCGUCGUCGg- -3'
miRNA:   3'- -UGgUGCGC--UAGUGCaAGCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 2868 0.67 0.932919
Target:  5'- aGCCGCGCgccagcgggaacacGAUCACGgcccCGCgGUCGa- -3'
miRNA:   3'- -UGGUGCG--------------CUAGUGCaa--GCGgCAGUac -5'
25637 5' -54 NC_005337.1 + 60163 0.67 0.929273
Target:  5'- uACCACcCGGUCACGUggaucaCGUgGUCAc- -3'
miRNA:   3'- -UGGUGcGCUAGUGCAa-----GCGgCAGUac -5'
25637 5' -54 NC_005337.1 + 94806 0.67 0.929273
Target:  5'- gACCugGCGAgCACGUcCGCCa----- -3'
miRNA:   3'- -UGGugCGCUaGUGCAaGCGGcaguac -5'
25637 5' -54 NC_005337.1 + 109081 0.67 0.926053
Target:  5'- cCCGCGCGAugccgcuggagugguUCACGcUCaGCCG-CGUGc -3'
miRNA:   3'- uGGUGCGCU---------------AGUGCaAG-CGGCaGUAC- -5'
25637 5' -54 NC_005337.1 + 93948 0.67 0.923857
Target:  5'- uCUACGUGuUCGCGUucUCGCUGUCc-- -3'
miRNA:   3'- uGGUGCGCuAGUGCA--AGCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 84990 0.67 0.923857
Target:  5'- uCCGCcCGggCGCGUUCGCCGa---- -3'
miRNA:   3'- uGGUGcGCuaGUGCAAGCGGCaguac -5'
25637 5' -54 NC_005337.1 + 88518 0.67 0.923857
Target:  5'- cGCCGCGCGGUaCGaacgcggggcCGUgcuagacggCGCCGUCAc- -3'
miRNA:   3'- -UGGUGCGCUA-GU----------GCAa--------GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 108845 0.67 0.918193
Target:  5'- -gCGCGCGG--GCGacaCGCCGUCGUGc -3'
miRNA:   3'- ugGUGCGCUagUGCaa-GCGGCAGUAC- -5'
25637 5' -54 NC_005337.1 + 83616 0.67 0.917613
Target:  5'- uCCACGCGAuccacagcgcuggUCGCGUUgcUGCUGUCcauUGa -3'
miRNA:   3'- uGGUGCGCU-------------AGUGCAA--GCGGCAGu--AC- -5'
25637 5' -54 NC_005337.1 + 78777 0.67 0.912284
Target:  5'- gGCCGaa-GAUCACGUUCguGCCcucgGUCAUGg -3'
miRNA:   3'- -UGGUgcgCUAGUGCAAG--CGG----CAGUAC- -5'
25637 5' -54 NC_005337.1 + 88952 0.67 0.912284
Target:  5'- gACCGCGCGGagGCGgagggCGCgGUCccGg -3'
miRNA:   3'- -UGGUGCGCUagUGCaa---GCGgCAGuaC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.