miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25637 5' -54 NC_005337.1 + 88952 0.67 0.912284
Target:  5'- gACCGCGCGGagGCGgagggCGCgGUCccGg -3'
miRNA:   3'- -UGGUGCGCUagUGCaa---GCGgCAGuaC- -5'
25637 5' -54 NC_005337.1 + 38358 0.67 0.90613
Target:  5'- cGCgAgGCGcgCGCGgcCGCCGUCGc- -3'
miRNA:   3'- -UGgUgCGCuaGUGCaaGCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 83530 0.67 0.90613
Target:  5'- cGCC-CGCGAUCACGagcaUCGUcuCGUCGc- -3'
miRNA:   3'- -UGGuGCGCUAGUGCa---AGCG--GCAGUac -5'
25637 5' -54 NC_005337.1 + 39483 0.68 0.899734
Target:  5'- uGCCGCGCGAcgCGCGcgCGCUGcugcUgGUGa -3'
miRNA:   3'- -UGGUGCGCUa-GUGCaaGCGGC----AgUAC- -5'
25637 5' -54 NC_005337.1 + 6655 0.68 0.899734
Target:  5'- cGCCGCGCGGUaCAa---CGCCGUCu-- -3'
miRNA:   3'- -UGGUGCGCUA-GUgcaaGCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 45922 0.68 0.897769
Target:  5'- -gCGCGCGAagaagacggucuucUCGCGcgCGCCGgcgcgCGUGg -3'
miRNA:   3'- ugGUGCGCU--------------AGUGCaaGCGGCa----GUAC- -5'
25637 5' -54 NC_005337.1 + 76861 0.68 0.893099
Target:  5'- uCCACGUaGGcCGCGUgcgCGCuCGUCAUGc -3'
miRNA:   3'- uGGUGCG-CUaGUGCAa--GCG-GCAGUAC- -5'
25637 5' -54 NC_005337.1 + 117307 0.68 0.893099
Target:  5'- cGCgUACGCGAacacCGCGgggaUCGCCGUCAc- -3'
miRNA:   3'- -UG-GUGCGCUa---GUGCa---AGCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 100235 0.68 0.893099
Target:  5'- -gCGCGUGAUCGCGguccCGcCCGcCAUGa -3'
miRNA:   3'- ugGUGCGCUAGUGCaa--GC-GGCaGUAC- -5'
25637 5' -54 NC_005337.1 + 91581 0.68 0.893099
Target:  5'- cUCugGCGAUCACGgUC-CCGUCc-- -3'
miRNA:   3'- uGGugCGCUAGUGCaAGcGGCAGuac -5'
25637 5' -54 NC_005337.1 + 84088 0.68 0.886229
Target:  5'- cGCCgcagaGCGCGGaCACGggcgcggUCGCCGUCu-- -3'
miRNA:   3'- -UGG-----UGCGCUaGUGCa------AGCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 69722 0.68 0.886229
Target:  5'- gGCCACGCGGUCcAgGaaggUGCCGUCc-- -3'
miRNA:   3'- -UGGUGCGCUAG-UgCaa--GCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 33012 0.68 0.886229
Target:  5'- gGCCGCGaucuUCGCGUccgCGCCGUCc-- -3'
miRNA:   3'- -UGGUGCgcu-AGUGCAa--GCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 103202 0.68 0.886229
Target:  5'- aACCcCGCGAUCGUGgaCGCCuUCGUGc -3'
miRNA:   3'- -UGGuGCGCUAGUGCaaGCGGcAGUAC- -5'
25637 5' -54 NC_005337.1 + 130021 0.68 0.886229
Target:  5'- aAUCACGCGGcCGCGgUCGCCG-CGc- -3'
miRNA:   3'- -UGGUGCGCUaGUGCaAGCGGCaGUac -5'
25637 5' -54 NC_005337.1 + 128482 0.68 0.879126
Target:  5'- gACCGCGUGcUCGCGggCGUgCGUCGc- -3'
miRNA:   3'- -UGGUGCGCuAGUGCaaGCG-GCAGUac -5'
25637 5' -54 NC_005337.1 + 87427 0.68 0.879126
Target:  5'- cGCCACGuCGuUCACGgucagcgucUUGCCGUCGcUGg -3'
miRNA:   3'- -UGGUGC-GCuAGUGCa--------AGCGGCAGU-AC- -5'
25637 5' -54 NC_005337.1 + 64928 0.68 0.871797
Target:  5'- cCCGCGCGGgaaaGCGcgCGCCGUgAUc -3'
miRNA:   3'- uGGUGCGCUag--UGCaaGCGGCAgUAc -5'
25637 5' -54 NC_005337.1 + 34580 0.69 0.864246
Target:  5'- gGCCGCGCGcagCGCGUcgaaGCUGUCGc- -3'
miRNA:   3'- -UGGUGCGCua-GUGCAag--CGGCAGUac -5'
25637 5' -54 NC_005337.1 + 94620 0.69 0.864246
Target:  5'- gGCCACGCGccccaCGCGgccgCGCCGcugCGUGu -3'
miRNA:   3'- -UGGUGCGCua---GUGCaa--GCGGCa--GUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.