miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25637 5' -54 NC_005337.1 + 38482 0.66 0.939369
Target:  5'- cGCCGgGCGcgCGCG-UCGCCGa---- -3'
miRNA:   3'- -UGGUgCGCuaGUGCaAGCGGCaguac -5'
25637 5' -54 NC_005337.1 + 38655 0.7 0.787438
Target:  5'- gGCC-CGCGccCACGgaCGCCGcCAUGg -3'
miRNA:   3'- -UGGuGCGCuaGUGCaaGCGGCaGUAC- -5'
25637 5' -54 NC_005337.1 + 38894 0.66 0.944048
Target:  5'- uUCGCGCGcGUCGCGcg-GCCGUCGc- -3'
miRNA:   3'- uGGUGCGC-UAGUGCaagCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 39483 0.68 0.899734
Target:  5'- uGCCGCGCGAcgCGCGcgCGCUGcugcUgGUGa -3'
miRNA:   3'- -UGGUGCGCUa-GUGCaaGCGGC----AgUAC- -5'
25637 5' -54 NC_005337.1 + 45723 0.66 0.956645
Target:  5'- cACCGaGCGggCugGUgacggCGCCGUCu-- -3'
miRNA:   3'- -UGGUgCGCuaGugCAa----GCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 45922 0.68 0.897769
Target:  5'- -gCGCGCGAagaagacggucuucUCGCGcgCGCCGgcgcgCGUGg -3'
miRNA:   3'- ugGUGCGCU--------------AGUGCaaGCGGCa----GUAC- -5'
25637 5' -54 NC_005337.1 + 47314 0.69 0.864246
Target:  5'- -gCGCGUGGUCAUGUUCgaggcgcgcGUgGUCAUGg -3'
miRNA:   3'- ugGUGCGCUAGUGCAAG---------CGgCAGUAC- -5'
25637 5' -54 NC_005337.1 + 48468 0.69 0.85648
Target:  5'- uACCAgGCGcucucguUCugGUUccugaagucugaCGCCGUCGUGa -3'
miRNA:   3'- -UGGUgCGCu------AGugCAA------------GCGGCAGUAC- -5'
25637 5' -54 NC_005337.1 + 50977 0.75 0.534235
Target:  5'- gACCGgGCGGggcgccgCGCGUUCGUCGUCGg- -3'
miRNA:   3'- -UGGUgCGCUa------GUGCAAGCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 51648 0.66 0.952684
Target:  5'- cGCUcCGCGGUCGCcagcgccCGCCGUCGc- -3'
miRNA:   3'- -UGGuGCGCUAGUGcaa----GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 56276 1.07 0.005581
Target:  5'- uACCACGCGAUCACGUUCGCCGUCAUGc -3'
miRNA:   3'- -UGGUGCGCUAGUGCAAGCGGCAGUAC- -5'
25637 5' -54 NC_005337.1 + 58859 0.66 0.939369
Target:  5'- uUCGCGCGcUCGCG--CGCCGUCc-- -3'
miRNA:   3'- uGGUGCGCuAGUGCaaGCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 59796 0.66 0.939369
Target:  5'- -gCACGCGAcCACGag-GCCGUCGg- -3'
miRNA:   3'- ugGUGCGCUaGUGCaagCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 60163 0.67 0.929273
Target:  5'- uACCACcCGGUCACGUggaucaCGUgGUCAc- -3'
miRNA:   3'- -UGGUGcGCUAGUGCAa-----GCGgCAGUac -5'
25637 5' -54 NC_005337.1 + 63005 0.66 0.939369
Target:  5'- cGCCACGCGGcgCAUGagcgCGuuGUCGa- -3'
miRNA:   3'- -UGGUGCGCUa-GUGCaa--GCggCAGUac -5'
25637 5' -54 NC_005337.1 + 64330 0.67 0.934444
Target:  5'- cACCACGCGGa-GCGUggCGCCG-CGg- -3'
miRNA:   3'- -UGGUGCGCUagUGCAa-GCGGCaGUac -5'
25637 5' -54 NC_005337.1 + 64928 0.68 0.871797
Target:  5'- cCCGCGCGGgaaaGCGcgCGCCGUgAUc -3'
miRNA:   3'- uGGUGCGCUag--UGCaaGCGGCAgUAc -5'
25637 5' -54 NC_005337.1 + 65716 0.67 0.912284
Target:  5'- -gCACGCGGUggggCGCGcccggCGCCGUCAc- -3'
miRNA:   3'- ugGUGCGCUA----GUGCaa---GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 65919 0.81 0.253497
Target:  5'- uCCACGCGAUCGCGaccgCGCCGUCc-- -3'
miRNA:   3'- uGGUGCGCUAGUGCaa--GCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 67039 0.66 0.956645
Target:  5'- gACCuuGcCGGUCAgCGUggcgagguagUCGCCGUcCAUGg -3'
miRNA:   3'- -UGGugC-GCUAGU-GCA----------AGCGGCA-GUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.