miRNA display CGI


Results 61 - 80 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25637 5' -54 NC_005337.1 + 87448 0.72 0.668199
Target:  5'- -aCACGCGGcUCACc-UCGCCGUCGUa -3'
miRNA:   3'- ugGUGCGCU-AGUGcaAGCGGCAGUAc -5'
25637 5' -54 NC_005337.1 + 88047 0.74 0.564677
Target:  5'- cGCCACGCuGAUCGCGUacgUGCuCGUCGg- -3'
miRNA:   3'- -UGGUGCG-CUAGUGCAa--GCG-GCAGUac -5'
25637 5' -54 NC_005337.1 + 88445 0.7 0.778067
Target:  5'- -aCGCGcCGGUCGCGgaacaCGCCGUCGa- -3'
miRNA:   3'- ugGUGC-GCUAGUGCaa---GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 88518 0.67 0.923857
Target:  5'- cGCCGCGCGGUaCGaacgcggggcCGUgcuagacggCGCCGUCAc- -3'
miRNA:   3'- -UGGUGCGCUA-GU----------GCAa--------GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 88952 0.67 0.912284
Target:  5'- gACCGCGCGGagGCGgagggCGCgGUCccGg -3'
miRNA:   3'- -UGGUGCGCUagUGCaa---GCGgCAGuaC- -5'
25637 5' -54 NC_005337.1 + 90387 0.66 0.944048
Target:  5'- gGCCGCGCGugcacaucaccAUCuccGCGUccaCGCCGUCGc- -3'
miRNA:   3'- -UGGUGCGC-----------UAG---UGCAa--GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 90403 0.66 0.948486
Target:  5'- -gCGCGuCGcgCACGUUCGUgGcCGUGa -3'
miRNA:   3'- ugGUGC-GCuaGUGCAAGCGgCaGUAC- -5'
25637 5' -54 NC_005337.1 + 90837 0.66 0.952684
Target:  5'- cACCGCGgGGUgC-CGcUCGCCGUCc-- -3'
miRNA:   3'- -UGGUGCgCUA-GuGCaAGCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 91581 0.68 0.893099
Target:  5'- cUCugGCGAUCACGgUC-CCGUCc-- -3'
miRNA:   3'- uGGugCGCUAGUGCaAGcGGCAGuac -5'
25637 5' -54 NC_005337.1 + 91891 0.69 0.851719
Target:  5'- cGCCGCGgcgccuccgggucgcCGGUCACGacgugcgUCGCCG-CGUGg -3'
miRNA:   3'- -UGGUGC---------------GCUAGUGCa------AGCGGCaGUAC- -5'
25637 5' -54 NC_005337.1 + 93774 0.66 0.944048
Target:  5'- cACCACGCac-CACGUgaUCGCUGUUg-- -3'
miRNA:   3'- -UGGUGCGcuaGUGCA--AGCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 93948 0.67 0.923857
Target:  5'- uCUACGUGuUCGCGUucUCGCUGUCc-- -3'
miRNA:   3'- uGGUGCGCuAGUGCA--AGCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 94620 0.69 0.864246
Target:  5'- gGCCACGCGccccaCGCGgccgCGCCGcugCGUGu -3'
miRNA:   3'- -UGGUGCGCua---GUGCaa--GCGGCa--GUAC- -5'
25637 5' -54 NC_005337.1 + 94806 0.67 0.929273
Target:  5'- gACCugGCGAgCACGUcCGCCa----- -3'
miRNA:   3'- -UGGugCGCUaGUGCAaGCGGcaguac -5'
25637 5' -54 NC_005337.1 + 95118 0.69 0.85648
Target:  5'- cGCU-CGCGGUCguccuccaGCG-UCGCCGUCAUa -3'
miRNA:   3'- -UGGuGCGCUAG--------UGCaAGCGGCAGUAc -5'
25637 5' -54 NC_005337.1 + 95186 0.7 0.81465
Target:  5'- cGCCACgGCGAcCACGaugUCGCCcaucugGUCGUGc -3'
miRNA:   3'- -UGGUG-CGCUaGUGCa--AGCGG------CAGUAC- -5'
25637 5' -54 NC_005337.1 + 95310 0.67 0.934444
Target:  5'- cGCgGCGCGcuGUUGCGcUCGUCGUCGg- -3'
miRNA:   3'- -UGgUGCGC--UAGUGCaAGCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 95765 0.71 0.75893
Target:  5'- cCC-CGCGAUCGCGgcgaCGUCGUCGg- -3'
miRNA:   3'- uGGuGCGCUAGUGCaa--GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 97418 0.7 0.787438
Target:  5'- aACCGCGUGGUCaACGUgucCGUgGUCAg- -3'
miRNA:   3'- -UGGUGCGCUAG-UGCAa--GCGgCAGUac -5'
25637 5' -54 NC_005337.1 + 100235 0.68 0.893099
Target:  5'- -gCGCGUGAUCGCGguccCGcCCGcCAUGa -3'
miRNA:   3'- ugGUGCGCUAGUGCaa--GC-GGCaGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.