miRNA display CGI


Results 81 - 100 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25637 5' -54 NC_005337.1 + 101166 0.75 0.544323
Target:  5'- gACCuACGCGAUCACGUuccgcgugaUCGCCG-CGa- -3'
miRNA:   3'- -UGG-UGCGCUAGUGCA---------AGCGGCaGUac -5'
25637 5' -54 NC_005337.1 + 103202 0.68 0.886229
Target:  5'- aACCcCGCGAUCGUGgaCGCCuUCGUGc -3'
miRNA:   3'- -UGGuGCGCUAGUGCaaGCGGcAGUAC- -5'
25637 5' -54 NC_005337.1 + 105098 0.66 0.952684
Target:  5'- aACCucUGCGGUCGCGcggCGCCG-CGUu -3'
miRNA:   3'- -UGGu-GCGCUAGUGCaa-GCGGCaGUAc -5'
25637 5' -54 NC_005337.1 + 105224 0.72 0.688812
Target:  5'- aGCUGCGCGcUCGCGggCGCCcggcUCAUGg -3'
miRNA:   3'- -UGGUGCGCuAGUGCaaGCGGc---AGUAC- -5'
25637 5' -54 NC_005337.1 + 105404 0.69 0.831951
Target:  5'- gACCACuCGcgCGCGcugaUCGCCGUCGg- -3'
miRNA:   3'- -UGGUGcGCuaGUGCa---AGCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 106038 0.67 0.934444
Target:  5'- uGCCGCGCGAcgGCGUUuCGgUGaUCGUGu -3'
miRNA:   3'- -UGGUGCGCUagUGCAA-GCgGC-AGUAC- -5'
25637 5' -54 NC_005337.1 + 108845 0.67 0.918193
Target:  5'- -gCGCGCGG--GCGacaCGCCGUCGUGc -3'
miRNA:   3'- ugGUGCGCUagUGCaa-GCGGCAGUAC- -5'
25637 5' -54 NC_005337.1 + 109081 0.67 0.926053
Target:  5'- cCCGCGCGAugccgcuggagugguUCACGcUCaGCCG-CGUGc -3'
miRNA:   3'- uGGUGCGCU---------------AGUGCaAG-CGGCaGUAC- -5'
25637 5' -54 NC_005337.1 + 110963 0.69 0.840325
Target:  5'- aGCUGCGCGGcCGCG-UCGaCGUCGUGc -3'
miRNA:   3'- -UGGUGCGCUaGUGCaAGCgGCAGUAC- -5'
25637 5' -54 NC_005337.1 + 111001 0.69 0.831951
Target:  5'- cACCAuCGCGAUUuaagggccguaACGUgcCGCCGUCAc- -3'
miRNA:   3'- -UGGU-GCGCUAG-----------UGCAa-GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 112137 0.66 0.943591
Target:  5'- uCCugGCGGUCguuguccGCGUacUCGCCGcCGa- -3'
miRNA:   3'- uGGugCGCUAG-------UGCA--AGCGGCaGUac -5'
25637 5' -54 NC_005337.1 + 117307 0.68 0.893099
Target:  5'- cGCgUACGCGAacacCGCGgggaUCGCCGUCAc- -3'
miRNA:   3'- -UG-GUGCGCUa---GUGCa---AGCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 118133 0.66 0.939369
Target:  5'- cACgAUGCGuccGUCACG-UCGCCGUaCAUc -3'
miRNA:   3'- -UGgUGCGC---UAGUGCaAGCGGCA-GUAc -5'
25637 5' -54 NC_005337.1 + 118763 0.7 0.813766
Target:  5'- uGCUGCGCGAcgUCcuagaugacgccgGCGgcggCGCCGUCGUGc -3'
miRNA:   3'- -UGGUGCGCU--AG-------------UGCaa--GCGGCAGUAC- -5'
25637 5' -54 NC_005337.1 + 120309 0.7 0.778067
Target:  5'- gGCgGCGCGGUaCACGgUCGCCGacgggugCAUGc -3'
miRNA:   3'- -UGgUGCGCUA-GUGCaAGCGGCa------GUAC- -5'
25637 5' -54 NC_005337.1 + 120922 0.7 0.787438
Target:  5'- cGCCGCGUGucccggCGCGUgcccguUCGUgGUCAUGg -3'
miRNA:   3'- -UGGUGCGCua----GUGCA------AGCGgCAGUAC- -5'
25637 5' -54 NC_005337.1 + 123613 0.66 0.952684
Target:  5'- uGCCGCGC--UCGCGggUGCUGacgcUCGUGg -3'
miRNA:   3'- -UGGUGCGcuAGUGCaaGCGGC----AGUAC- -5'
25637 5' -54 NC_005337.1 + 128482 0.68 0.879126
Target:  5'- gACCGCGUGcUCGCGggCGUgCGUCGc- -3'
miRNA:   3'- -UGGUGCGCuAGUGCaaGCG-GCAGUac -5'
25637 5' -54 NC_005337.1 + 130021 0.68 0.886229
Target:  5'- aAUCACGCGGcCGCGgUCGCCG-CGc- -3'
miRNA:   3'- -UGGUGCGCUaGUGCaAGCGGCaGUac -5'
25637 5' -54 NC_005337.1 + 130090 0.72 0.709231
Target:  5'- gACCACcCGGUgAUGgaggaCGCCGUCAUGg -3'
miRNA:   3'- -UGGUGcGCUAgUGCaa---GCGGCAGUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.