miRNA display CGI


Results 41 - 60 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25637 5' -54 NC_005337.1 + 88047 0.74 0.564677
Target:  5'- cGCCACGCuGAUCGCGUacgUGCuCGUCGg- -3'
miRNA:   3'- -UGGUGCG-CUAGUGCAa--GCG-GCAGUac -5'
25637 5' -54 NC_005337.1 + 87448 0.72 0.668199
Target:  5'- -aCACGCGGcUCACc-UCGCCGUCGUa -3'
miRNA:   3'- ugGUGCGCU-AGUGcaAGCGGCAGUAc -5'
25637 5' -54 NC_005337.1 + 87427 0.68 0.879126
Target:  5'- cGCCACGuCGuUCACGgucagcgucUUGCCGUCGcUGg -3'
miRNA:   3'- -UGGUGC-GCuAGUGCa--------AGCGGCAGU-AC- -5'
25637 5' -54 NC_005337.1 + 86238 0.74 0.595554
Target:  5'- uCCGCGCGu---CGUUCGCCGcCGUGu -3'
miRNA:   3'- uGGUGCGCuaguGCAAGCGGCaGUAC- -5'
25637 5' -54 NC_005337.1 + 84990 0.67 0.923857
Target:  5'- uCCGCcCGggCGCGUUCGCCGa---- -3'
miRNA:   3'- uGGUGcGCuaGUGCAAGCGGCaguac -5'
25637 5' -54 NC_005337.1 + 84664 0.67 0.934444
Target:  5'- uCCGCGUGAUCugG-UCGUCGgacggggcCGUGu -3'
miRNA:   3'- uGGUGCGCUAGugCaAGCGGCa-------GUAC- -5'
25637 5' -54 NC_005337.1 + 84088 0.68 0.886229
Target:  5'- cGCCgcagaGCGCGGaCACGggcgcggUCGCCGUCu-- -3'
miRNA:   3'- -UGG-----UGCGCUaGUGCa------AGCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 83616 0.67 0.917613
Target:  5'- uCCACGCGAuccacagcgcuggUCGCGUUgcUGCUGUCcauUGa -3'
miRNA:   3'- uGGUGCGCU-------------AGUGCAA--GCGGCAGu--AC- -5'
25637 5' -54 NC_005337.1 + 83530 0.67 0.90613
Target:  5'- cGCC-CGCGAUCACGagcaUCGUcuCGUCGc- -3'
miRNA:   3'- -UGGuGCGCUAGUGCa---AGCG--GCAGUac -5'
25637 5' -54 NC_005337.1 + 82259 0.75 0.504394
Target:  5'- gACCGCGCGcgCGCGgcCGuCCGUCAc- -3'
miRNA:   3'- -UGGUGCGCuaGUGCaaGC-GGCAGUac -5'
25637 5' -54 NC_005337.1 + 82091 0.66 0.952684
Target:  5'- --gACGCGGUCGgcCGUcugcgCGCCGUCGa- -3'
miRNA:   3'- uggUGCGCUAGU--GCAa----GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 78777 0.67 0.912284
Target:  5'- gGCCGaa-GAUCACGUUCguGCCcucgGUCAUGg -3'
miRNA:   3'- -UGGUgcgCUAGUGCAAG--CGG----CAGUAC- -5'
25637 5' -54 NC_005337.1 + 76861 0.68 0.893099
Target:  5'- uCCACGUaGGcCGCGUgcgCGCuCGUCAUGc -3'
miRNA:   3'- uGGUGCG-CUaGUGCAa--GCG-GCAGUAC- -5'
25637 5' -54 NC_005337.1 + 76708 0.72 0.678525
Target:  5'- uCCACGUGGUCGcCGUcCaCCGUCAUGu -3'
miRNA:   3'- uGGUGCGCUAGU-GCAaGcGGCAGUAC- -5'
25637 5' -54 NC_005337.1 + 75834 0.66 0.938887
Target:  5'- gUCAUGCGGUCGcCGUgaucgucUCGCCGcUCcgGa -3'
miRNA:   3'- uGGUGCGCUAGU-GCA-------AGCGGC-AGuaC- -5'
25637 5' -54 NC_005337.1 + 74572 0.72 0.719345
Target:  5'- gGCCGCGCGG-CACGcggacgCGCUGUCGc- -3'
miRNA:   3'- -UGGUGCGCUaGUGCaa----GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 74486 0.69 0.848503
Target:  5'- gGCCuCGUGGUCGCGUgccggCGCCGg---- -3'
miRNA:   3'- -UGGuGCGCUAGUGCAa----GCGGCaguac -5'
25637 5' -54 NC_005337.1 + 72364 0.76 0.494606
Target:  5'- uCCGCGCGAUCGCGcggacggccgUCGCgGUCAg- -3'
miRNA:   3'- uGGUGCGCUAGUGCa---------AGCGgCAGUac -5'
25637 5' -54 NC_005337.1 + 70157 0.67 0.934444
Target:  5'- cGCCAUGCGc-CGCGUgagccagGCCGUCGUc -3'
miRNA:   3'- -UGGUGCGCuaGUGCAag-----CGGCAGUAc -5'
25637 5' -54 NC_005337.1 + 69722 0.68 0.886229
Target:  5'- gGCCACGCGGUCcAgGaaggUGCCGUCc-- -3'
miRNA:   3'- -UGGUGCGCUAG-UgCaa--GCGGCAGuac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.