miRNA display CGI


Results 81 - 100 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25637 5' -54 NC_005337.1 + 38655 0.7 0.787438
Target:  5'- gGCC-CGCGccCACGgaCGCCGcCAUGg -3'
miRNA:   3'- -UGGuGCGCuaGUGCaaGCGGCaGUAC- -5'
25637 5' -54 NC_005337.1 + 38482 0.66 0.939369
Target:  5'- cGCCGgGCGcgCGCG-UCGCCGa---- -3'
miRNA:   3'- -UGGUgCGCuaGUGCaAGCGGCaguac -5'
25637 5' -54 NC_005337.1 + 38358 0.67 0.90613
Target:  5'- cGCgAgGCGcgCGCGgcCGCCGUCGc- -3'
miRNA:   3'- -UGgUgCGCuaGUGCaaGCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 36895 0.7 0.805738
Target:  5'- uUCGCGCGG-CGCGgcgUgGCCGUCAg- -3'
miRNA:   3'- uGGUGCGCUaGUGCa--AgCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 34905 0.7 0.778067
Target:  5'- uGCCGCGCGucCACGggCGUCaaGUCAUGc -3'
miRNA:   3'- -UGGUGCGCuaGUGCaaGCGG--CAGUAC- -5'
25637 5' -54 NC_005337.1 + 34580 0.69 0.864246
Target:  5'- gGCCGCGCGcagCGCGUcgaaGCUGUCGc- -3'
miRNA:   3'- -UGGUGCGCua-GUGCAag--CGGCAGUac -5'
25637 5' -54 NC_005337.1 + 34231 0.66 0.948486
Target:  5'- gACCACGCG--CACGgUC-CCGUCGa- -3'
miRNA:   3'- -UGGUGCGCuaGUGCaAGcGGCAGUac -5'
25637 5' -54 NC_005337.1 + 33012 0.68 0.886229
Target:  5'- gGCCGCGaucuUCGCGUccgCGCCGUCc-- -3'
miRNA:   3'- -UGGUGCgcu-AGUGCAa--GCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 30251 0.66 0.948486
Target:  5'- uCCGCGCGAUgGCG-UCGCCc----- -3'
miRNA:   3'- uGGUGCGCUAgUGCaAGCGGcaguac -5'
25637 5' -54 NC_005337.1 + 28493 0.71 0.768561
Target:  5'- gGCCGCGCGGcgCGCGgUCGCgCGgcacugCGUGg -3'
miRNA:   3'- -UGGUGCGCUa-GUGCaAGCG-GCa-----GUAC- -5'
25637 5' -54 NC_005337.1 + 25106 0.66 0.939369
Target:  5'- cCCGCGCGG-CGCGgcgCGCgCGgacgCGUGa -3'
miRNA:   3'- uGGUGCGCUaGUGCaa-GCG-GCa---GUAC- -5'
25637 5' -54 NC_005337.1 + 17047 0.66 0.948486
Target:  5'- uCCGCGCGGUCugcACGUUcCGCUGgaugcgCAUc -3'
miRNA:   3'- uGGUGCGCUAG---UGCAA-GCGGCa-----GUAc -5'
25637 5' -54 NC_005337.1 + 16930 0.73 0.62668
Target:  5'- uCCACGCGGcCgACGUUgGCCGUCGc- -3'
miRNA:   3'- uGGUGCGCUaG-UGCAAgCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 16751 0.7 0.777122
Target:  5'- --uGCGCGGUCACGgcgCGCCGgcugaugUCGUGc -3'
miRNA:   3'- uggUGCGCUAGUGCaa-GCGGC-------AGUAC- -5'
25637 5' -54 NC_005337.1 + 9195 0.69 0.854901
Target:  5'- gGCCACGCGGUCGCGgacccagaaCCgGUCGUa -3'
miRNA:   3'- -UGGUGCGCUAGUGCaagc-----GG-CAGUAc -5'
25637 5' -54 NC_005337.1 + 9152 0.72 0.709231
Target:  5'- cGCUugGCGGUCGCuagccUCGUCGUCAg- -3'
miRNA:   3'- -UGGugCGCUAGUGca---AGCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 8955 0.72 0.688812
Target:  5'- gGCCGCGU--UCACGUUUGCgccugcggCGUCAUGa -3'
miRNA:   3'- -UGGUGCGcuAGUGCAAGCG--------GCAGUAC- -5'
25637 5' -54 NC_005337.1 + 7836 0.69 0.864246
Target:  5'- -gCGCGCGGUgguacacgcgCACGcgCGCCGUCGc- -3'
miRNA:   3'- ugGUGCGCUA----------GUGCaaGCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 6655 0.68 0.899734
Target:  5'- cGCCGCGCGGUaCAa---CGCCGUCu-- -3'
miRNA:   3'- -UGGUGCGCUA-GUgcaaGCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 5988 0.7 0.796665
Target:  5'- gGCCAgGCGcgCGCGUUgcagacCGCCG-CGUGc -3'
miRNA:   3'- -UGGUgCGCuaGUGCAA------GCGGCaGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.