miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25637 5' -54 NC_005337.1 + 69004 0.74 0.595554
Target:  5'- uCCGCGCGAUCGC---CGCCGcCGUGu -3'
miRNA:   3'- uGGUGCGCUAGUGcaaGCGGCaGUAC- -5'
25637 5' -54 NC_005337.1 + 74572 0.72 0.719345
Target:  5'- gGCCGCGCGG-CACGcggacgCGCUGUCGc- -3'
miRNA:   3'- -UGGUGCGCUaGUGCaa----GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 28493 0.71 0.768561
Target:  5'- gGCCGCGCGGcgCGCGgUCGCgCGgcacugCGUGg -3'
miRNA:   3'- -UGGUGCGCUa-GUGCaAGCG-GCa-----GUAC- -5'
25637 5' -54 NC_005337.1 + 16751 0.7 0.777122
Target:  5'- --uGCGCGGUCACGgcgCGCCGgcugaugUCGUGc -3'
miRNA:   3'- uggUGCGCUAGUGCaa-GCGGC-------AGUAC- -5'
25637 5' -54 NC_005337.1 + 120309 0.7 0.778067
Target:  5'- gGCgGCGCGGUaCACGgUCGCCGacgggugCAUGc -3'
miRNA:   3'- -UGgUGCGCUA-GUGCaAGCGGCa------GUAC- -5'
25637 5' -54 NC_005337.1 + 97418 0.7 0.787438
Target:  5'- aACCGCGUGGUCaACGUgucCGUgGUCAg- -3'
miRNA:   3'- -UGGUGCGCUAG-UGCAa--GCGgCAGUac -5'
25637 5' -54 NC_005337.1 + 74486 0.69 0.848503
Target:  5'- gGCCuCGUGGUCGCGUgccggCGCCGg---- -3'
miRNA:   3'- -UGGuGCGCUAGUGCAa----GCGGCaguac -5'
25637 5' -54 NC_005337.1 + 9195 0.69 0.854901
Target:  5'- gGCCACGCGGUCGCGgacccagaaCCgGUCGUa -3'
miRNA:   3'- -UGGUGCGCUAGUGCaagc-----GG-CAGUAc -5'
25637 5' -54 NC_005337.1 + 47314 0.69 0.864246
Target:  5'- -gCGCGUGGUCAUGUUCgaggcgcgcGUgGUCAUGg -3'
miRNA:   3'- ugGUGCGCUAGUGCAAG---------CGgCAGUAC- -5'
25637 5' -54 NC_005337.1 + 100235 0.68 0.893099
Target:  5'- -gCGCGUGAUCGCGguccCGcCCGcCAUGa -3'
miRNA:   3'- ugGUGCGCUAGUGCaa--GC-GGCaGUAC- -5'
25637 5' -54 NC_005337.1 + 91581 0.68 0.893099
Target:  5'- cUCugGCGAUCACGgUC-CCGUCc-- -3'
miRNA:   3'- uGGugCGCUAGUGCaAGcGGCAGuac -5'
25637 5' -54 NC_005337.1 + 130021 0.68 0.886229
Target:  5'- aAUCACGCGGcCGCGgUCGCCG-CGc- -3'
miRNA:   3'- -UGGUGCGCUaGUGCaAGCGGCaGUac -5'
25637 5' -54 NC_005337.1 + 103202 0.68 0.886229
Target:  5'- aACCcCGCGAUCGUGgaCGCCuUCGUGc -3'
miRNA:   3'- -UGGuGCGCUAGUGCaaGCGGcAGUAC- -5'
25637 5' -54 NC_005337.1 + 128482 0.68 0.879126
Target:  5'- gACCGCGUGcUCGCGggCGUgCGUCGc- -3'
miRNA:   3'- -UGGUGCGCuAGUGCaaGCG-GCAGUac -5'
25637 5' -54 NC_005337.1 + 87427 0.68 0.879126
Target:  5'- cGCCACGuCGuUCACGgucagcgucUUGCCGUCGcUGg -3'
miRNA:   3'- -UGGUGC-GCuAGUGCa--------AGCGGCAGU-AC- -5'
25637 5' -54 NC_005337.1 + 64928 0.68 0.871797
Target:  5'- cCCGCGCGGgaaaGCGcgCGCCGUgAUc -3'
miRNA:   3'- uGGUGCGCUag--UGCaaGCGGCAgUAc -5'
25637 5' -54 NC_005337.1 + 67039 0.66 0.956645
Target:  5'- gACCuuGcCGGUCAgCGUggcgagguagUCGCCGUcCAUGg -3'
miRNA:   3'- -UGGugC-GCUAGU-GCA----------AGCGGCA-GUAC- -5'
25637 5' -54 NC_005337.1 + 65919 0.81 0.253497
Target:  5'- uCCACGCGAUCGCGaccgCGCCGUCc-- -3'
miRNA:   3'- uGGUGCGCUAGUGCaa--GCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 72364 0.76 0.494606
Target:  5'- uCCGCGCGAUCGCGcggacggccgUCGCgGUCAg- -3'
miRNA:   3'- uGGUGCGCUAGUGCa---------AGCGgCAGUac -5'
25637 5' -54 NC_005337.1 + 82259 0.75 0.504394
Target:  5'- gACCGCGCGcgCGCGgcCGuCCGUCAc- -3'
miRNA:   3'- -UGGUGCGCuaGUGCaaGC-GGCAGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.