Results 21 - 40 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25637 | 5' | -54 | NC_005337.1 | + | 118763 | 0.7 | 0.813766 |
Target: 5'- uGCUGCGCGAcgUCcuagaugacgccgGCGgcggCGCCGUCGUGc -3' miRNA: 3'- -UGGUGCGCU--AG-------------UGCaa--GCGGCAGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 36895 | 0.7 | 0.805738 |
Target: 5'- uUCGCGCGG-CGCGgcgUgGCCGUCAg- -3' miRNA: 3'- uGGUGCGCUaGUGCa--AgCGGCAGUac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 34905 | 0.7 | 0.778067 |
Target: 5'- uGCCGCGCGucCACGggCGUCaaGUCAUGc -3' miRNA: 3'- -UGGUGCGCuaGUGCaaGCGG--CAGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 87448 | 0.72 | 0.668199 |
Target: 5'- -aCACGCGGcUCACc-UCGCCGUCGUa -3' miRNA: 3'- ugGUGCGCU-AGUGcaAGCGGCAGUAc -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 33012 | 0.68 | 0.886229 |
Target: 5'- gGCCGCGaucuUCGCGUccgCGCCGUCc-- -3' miRNA: 3'- -UGGUGCgcu-AGUGCAa--GCGGCAGuac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 110963 | 0.69 | 0.840325 |
Target: 5'- aGCUGCGCGGcCGCG-UCGaCGUCGUGc -3' miRNA: 3'- -UGGUGCGCUaGUGCaAGCgGCAGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 5988 | 0.7 | 0.796665 |
Target: 5'- gGCCAgGCGcgCGCGUUgcagacCGCCG-CGUGc -3' miRNA: 3'- -UGGUgCGCuaGUGCAA------GCGGCaGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 16930 | 0.73 | 0.62668 |
Target: 5'- uCCACGCGGcCgACGUUgGCCGUCGc- -3' miRNA: 3'- uGGUGCGCUaG-UGCAAgCGGCAGUac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 111001 | 0.69 | 0.831951 |
Target: 5'- cACCAuCGCGAUUuaagggccguaACGUgcCGCCGUCAc- -3' miRNA: 3'- -UGGU-GCGCUAG-----------UGCAa-GCGGCAGUac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 86238 | 0.74 | 0.595554 |
Target: 5'- uCCGCGCGu---CGUUCGCCGcCGUGu -3' miRNA: 3'- uGGUGCGCuaguGCAAGCGGCaGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 3360 | 0.7 | 0.805738 |
Target: 5'- gGCCAUGUGGUaCAUG-UCGUCGUuCGUGg -3' miRNA: 3'- -UGGUGCGCUA-GUGCaAGCGGCA-GUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 95186 | 0.7 | 0.81465 |
Target: 5'- cGCCACgGCGAcCACGaugUCGCCcaucugGUCGUGc -3' miRNA: 3'- -UGGUG-CGCUaGUGCa--AGCGG------CAGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 120922 | 0.7 | 0.787438 |
Target: 5'- cGCCGCGUGucccggCGCGUgcccguUCGUgGUCAUGg -3' miRNA: 3'- -UGGUGCGCua----GUGCA------AGCGgCAGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 88445 | 0.7 | 0.778067 |
Target: 5'- -aCGCGcCGGUCGCGgaacaCGCCGUCGa- -3' miRNA: 3'- ugGUGC-GCUAGUGCaa---GCGGCAGUac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 130090 | 0.72 | 0.709231 |
Target: 5'- gACCACcCGGUgAUGgaggaCGCCGUCAUGg -3' miRNA: 3'- -UGGUGcGCUAgUGCaa---GCGGCAGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 76708 | 0.72 | 0.678525 |
Target: 5'- uCCACGUGGUCGcCGUcCaCCGUCAUGu -3' miRNA: 3'- uGGUGCGCUAGU-GCAaGcGGCAGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 39483 | 0.68 | 0.899734 |
Target: 5'- uGCCGCGCGAcgCGCGcgCGCUGcugcUgGUGa -3' miRNA: 3'- -UGGUGCGCUa-GUGCaaGCGGC----AgUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 69722 | 0.68 | 0.886229 |
Target: 5'- gGCCACGCGGUCcAgGaaggUGCCGUCc-- -3' miRNA: 3'- -UGGUGCGCUAG-UgCaa--GCGGCAGuac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 94620 | 0.69 | 0.864246 |
Target: 5'- gGCCACGCGccccaCGCGgccgCGCCGcugCGUGu -3' miRNA: 3'- -UGGUGCGCua---GUGCaa--GCGGCa--GUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 91891 | 0.69 | 0.851719 |
Target: 5'- cGCCGCGgcgccuccgggucgcCGGUCACGacgugcgUCGCCG-CGUGg -3' miRNA: 3'- -UGGUGC---------------GCUAGUGCa------AGCGGCaGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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