miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25637 5' -54 NC_005337.1 + 2868 0.67 0.932919
Target:  5'- aGCCGCGCgccagcgggaacacGAUCACGgcccCGCgGUCGa- -3'
miRNA:   3'- -UGGUGCG--------------CUAGUGCaa--GCGgCAGUac -5'
25637 5' -54 NC_005337.1 + 83530 0.67 0.90613
Target:  5'- cGCC-CGCGAUCACGagcaUCGUcuCGUCGc- -3'
miRNA:   3'- -UGGuGCGCUAGUGCa---AGCG--GCAGUac -5'
25637 5' -54 NC_005337.1 + 110963 0.69 0.840325
Target:  5'- aGCUGCGCGGcCGCG-UCGaCGUCGUGc -3'
miRNA:   3'- -UGGUGCGCUaGUGCaAGCgGCAGUAC- -5'
25637 5' -54 NC_005337.1 + 94806 0.67 0.929273
Target:  5'- gACCugGCGAgCACGUcCGCCa----- -3'
miRNA:   3'- -UGGugCGCUaGUGCAaGCGGcaguac -5'
25637 5' -54 NC_005337.1 + 111001 0.69 0.831951
Target:  5'- cACCAuCGCGAUUuaagggccguaACGUgcCGCCGUCAc- -3'
miRNA:   3'- -UGGU-GCGCUAG-----------UGCAa-GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 90387 0.66 0.944048
Target:  5'- gGCCGCGCGugcacaucaccAUCuccGCGUccaCGCCGUCGc- -3'
miRNA:   3'- -UGGUGCGC-----------UAG---UGCAa--GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 48468 0.69 0.85648
Target:  5'- uACCAgGCGcucucguUCugGUUccugaagucugaCGCCGUCGUGa -3'
miRNA:   3'- -UGGUgCGCu------AGugCAA------------GCGGCAGUAC- -5'
25637 5' -54 NC_005337.1 + 38894 0.66 0.944048
Target:  5'- uUCGCGCGcGUCGCGcg-GCCGUCGc- -3'
miRNA:   3'- uGGUGCGC-UAGUGCaagCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 112137 0.66 0.943591
Target:  5'- uCCugGCGGUCguuguccGCGUacUCGCCGcCGa- -3'
miRNA:   3'- uGGugCGCUAG-------UGCA--AGCGGCaGUac -5'
25637 5' -54 NC_005337.1 + 63005 0.66 0.939369
Target:  5'- cGCCACGCGGcgCAUGagcgCGuuGUCGa- -3'
miRNA:   3'- -UGGUGCGCUa-GUGCaa--GCggCAGUac -5'
25637 5' -54 NC_005337.1 + 59796 0.66 0.939369
Target:  5'- -gCACGCGAcCACGag-GCCGUCGg- -3'
miRNA:   3'- ugGUGCGCUaGUGCaagCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 106038 0.67 0.934444
Target:  5'- uGCCGCGCGAcgGCGUUuCGgUGaUCGUGu -3'
miRNA:   3'- -UGGUGCGCUagUGCAA-GCgGC-AGUAC- -5'
25637 5' -54 NC_005337.1 + 84664 0.67 0.934444
Target:  5'- uCCGCGUGAUCugG-UCGUCGgacggggcCGUGu -3'
miRNA:   3'- uGGUGCGCUAGugCaAGCGGCa-------GUAC- -5'
25637 5' -54 NC_005337.1 + 109081 0.67 0.926053
Target:  5'- cCCGCGCGAugccgcuggagugguUCACGcUCaGCCG-CGUGc -3'
miRNA:   3'- uGGUGCGCU---------------AGUGCaAG-CGGCaGUAC- -5'
25637 5' -54 NC_005337.1 + 88518 0.67 0.923857
Target:  5'- cGCCGCGCGGUaCGaacgcggggcCGUgcuagacggCGCCGUCAc- -3'
miRNA:   3'- -UGGUGCGCUA-GU----------GCAa--------GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 84990 0.67 0.923857
Target:  5'- uCCGCcCGggCGCGUUCGCCGa---- -3'
miRNA:   3'- uGGUGcGCuaGUGCAAGCGGCaguac -5'
25637 5' -54 NC_005337.1 + 78777 0.67 0.912284
Target:  5'- gGCCGaa-GAUCACGUUCguGCCcucgGUCAUGg -3'
miRNA:   3'- -UGGUgcgCUAGUGCAAG--CGG----CAGUAC- -5'
25637 5' -54 NC_005337.1 + 39483 0.68 0.899734
Target:  5'- uGCCGCGCGAcgCGCGcgCGCUGcugcUgGUGa -3'
miRNA:   3'- -UGGUGCGCUa-GUGCaaGCGGC----AgUAC- -5'
25637 5' -54 NC_005337.1 + 84088 0.68 0.886229
Target:  5'- cGCCgcagaGCGCGGaCACGggcgcggUCGCCGUCu-- -3'
miRNA:   3'- -UGG-----UGCGCUaGUGCa------AGCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 7836 0.69 0.864246
Target:  5'- -gCGCGCGGUgguacacgcgCACGcgCGCCGUCGc- -3'
miRNA:   3'- ugGUGCGCUA----------GUGCaaGCGGCAGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.