miRNA display CGI


Results 61 - 80 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25637 5' -54 NC_005337.1 + 56276 1.07 0.005581
Target:  5'- uACCACGCGAUCACGUUCGCCGUCAUGc -3'
miRNA:   3'- -UGGUGCGCUAGUGCAAGCGGCAGUAC- -5'
25637 5' -54 NC_005337.1 + 65919 0.81 0.253497
Target:  5'- uCCACGCGAUCGCGaccgCGCCGUCc-- -3'
miRNA:   3'- uGGUGCGCUAGUGCaa--GCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 72364 0.76 0.494606
Target:  5'- uCCGCGCGAUCGCGcggacggccgUCGCgGUCAg- -3'
miRNA:   3'- uGGUGCGCUAGUGCa---------AGCGgCAGUac -5'
25637 5' -54 NC_005337.1 + 63005 0.66 0.939369
Target:  5'- cGCCACGCGGcgCAUGagcgCGuuGUCGa- -3'
miRNA:   3'- -UGGUGCGCUa-GUGCaa--GCggCAGUac -5'
25637 5' -54 NC_005337.1 + 82259 0.75 0.504394
Target:  5'- gACCGCGCGcgCGCGgcCGuCCGUCAc- -3'
miRNA:   3'- -UGGUGCGCuaGUGCaaGC-GGCAGUac -5'
25637 5' -54 NC_005337.1 + 38894 0.66 0.944048
Target:  5'- uUCGCGCGcGUCGCGcg-GCCGUCGc- -3'
miRNA:   3'- uGGUGCGC-UAGUGCaagCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 97418 0.7 0.787438
Target:  5'- aACCGCGUGGUCaACGUgucCGUgGUCAg- -3'
miRNA:   3'- -UGGUGCGCUAG-UGCAa--GCGgCAGUac -5'
25637 5' -54 NC_005337.1 + 74572 0.72 0.719345
Target:  5'- gGCCGCGCGG-CACGcggacgCGCUGUCGc- -3'
miRNA:   3'- -UGGUGCGCUaGUGCaa----GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 60163 0.67 0.929273
Target:  5'- uACCACcCGGUCACGUggaucaCGUgGUCAc- -3'
miRNA:   3'- -UGGUGcGCUAGUGCAa-----GCGgCAGUac -5'
25637 5' -54 NC_005337.1 + 87427 0.68 0.879126
Target:  5'- cGCCACGuCGuUCACGgucagcgucUUGCCGUCGcUGg -3'
miRNA:   3'- -UGGUGC-GCuAGUGCa--------AGCGGCAGU-AC- -5'
25637 5' -54 NC_005337.1 + 128482 0.68 0.879126
Target:  5'- gACCGCGUGcUCGCGggCGUgCGUCGc- -3'
miRNA:   3'- -UGGUGCGCuAGUGCaaGCG-GCAGUac -5'
25637 5' -54 NC_005337.1 + 108845 0.67 0.918193
Target:  5'- -gCGCGCGG--GCGacaCGCCGUCGUGc -3'
miRNA:   3'- ugGUGCGCUagUGCaa-GCGGCAGUAC- -5'
25637 5' -54 NC_005337.1 + 75834 0.66 0.938887
Target:  5'- gUCAUGCGGUCGcCGUgaucgucUCGCCGcUCcgGa -3'
miRNA:   3'- uGGUGCGCUAGU-GCA-------AGCGGC-AGuaC- -5'
25637 5' -54 NC_005337.1 + 58859 0.66 0.939369
Target:  5'- uUCGCGCGcUCGCG--CGCCGUCc-- -3'
miRNA:   3'- uGGUGCGCuAGUGCaaGCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 38482 0.66 0.939369
Target:  5'- cGCCGgGCGcgCGCG-UCGCCGa---- -3'
miRNA:   3'- -UGGUgCGCuaGUGCaAGCGGCaguac -5'
25637 5' -54 NC_005337.1 + 93774 0.66 0.944048
Target:  5'- cACCACGCac-CACGUgaUCGCUGUUg-- -3'
miRNA:   3'- -UGGUGCGcuaGUGCA--AGCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 90403 0.66 0.948486
Target:  5'- -gCGCGuCGcgCACGUUCGUgGcCGUGa -3'
miRNA:   3'- ugGUGC-GCuaGUGCAAGCGgCaGUAC- -5'
25637 5' -54 NC_005337.1 + 70157 0.67 0.934444
Target:  5'- cGCCAUGCGc-CGCGUgagccagGCCGUCGUc -3'
miRNA:   3'- -UGGUGCGCuaGUGCAag-----CGGCAGUAc -5'
25637 5' -54 NC_005337.1 + 130021 0.68 0.886229
Target:  5'- aAUCACGCGGcCGCGgUCGCCG-CGc- -3'
miRNA:   3'- -UGGUGCGCUaGUGCaAGCGGCaGUac -5'
25637 5' -54 NC_005337.1 + 103202 0.68 0.886229
Target:  5'- aACCcCGCGAUCGUGgaCGCCuUCGUGc -3'
miRNA:   3'- -UGGuGCGCUAGUGCaaGCGGcAGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.