Results 81 - 100 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25637 | 5' | -54 | NC_005337.1 | + | 128482 | 0.68 | 0.879126 |
Target: 5'- gACCGCGUGcUCGCGggCGUgCGUCGc- -3' miRNA: 3'- -UGGUGCGCuAGUGCaaGCG-GCAGUac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 100235 | 0.68 | 0.893099 |
Target: 5'- -gCGCGUGAUCGCGguccCGcCCGcCAUGa -3' miRNA: 3'- ugGUGCGCUAGUGCaa--GC-GGCaGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 117307 | 0.68 | 0.893099 |
Target: 5'- cGCgUACGCGAacacCGCGgggaUCGCCGUCAc- -3' miRNA: 3'- -UG-GUGCGCUa---GUGCa---AGCGGCAGUac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 76861 | 0.68 | 0.893099 |
Target: 5'- uCCACGUaGGcCGCGUgcgCGCuCGUCAUGc -3' miRNA: 3'- uGGUGCG-CUaGUGCAa--GCG-GCAGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 132826 | 0.66 | 0.952684 |
Target: 5'- uCCGCGaCGuUCACGUgcacgaUCGCCGgCAUa -3' miRNA: 3'- uGGUGC-GCuAGUGCA------AGCGGCaGUAc -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 105098 | 0.66 | 0.952684 |
Target: 5'- aACCucUGCGGUCGCGcggCGCCG-CGUu -3' miRNA: 3'- -UGGu-GCGCUAGUGCaa-GCGGCaGUAc -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 51648 | 0.66 | 0.952684 |
Target: 5'- cGCUcCGCGGUCGCcagcgccCGCCGUCGc- -3' miRNA: 3'- -UGGuGCGCUAGUGcaa----GCGGCAGUac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 123613 | 0.66 | 0.952684 |
Target: 5'- uGCCGCGC--UCGCGggUGCUGacgcUCGUGg -3' miRNA: 3'- -UGGUGCGcuAGUGCaaGCGGC----AGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 90403 | 0.66 | 0.948486 |
Target: 5'- -gCGCGuCGcgCACGUUCGUgGcCGUGa -3' miRNA: 3'- ugGUGC-GCuaGUGCAAGCGgCaGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 93774 | 0.66 | 0.944048 |
Target: 5'- cACCACGCac-CACGUgaUCGCUGUUg-- -3' miRNA: 3'- -UGGUGCGcuaGUGCA--AGCGGCAGuac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 38482 | 0.66 | 0.939369 |
Target: 5'- cGCCGgGCGcgCGCG-UCGCCGa---- -3' miRNA: 3'- -UGGUgCGCuaGUGCaAGCGGCaguac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 58859 | 0.66 | 0.939369 |
Target: 5'- uUCGCGCGcUCGCG--CGCCGUCc-- -3' miRNA: 3'- uGGUGCGCuAGUGCaaGCGGCAGuac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 75834 | 0.66 | 0.938887 |
Target: 5'- gUCAUGCGGUCGcCGUgaucgucUCGCCGcUCcgGa -3' miRNA: 3'- uGGUGCGCUAGU-GCA-------AGCGGC-AGuaC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 70157 | 0.67 | 0.934444 |
Target: 5'- cGCCAUGCGc-CGCGUgagccagGCCGUCGUc -3' miRNA: 3'- -UGGUGCGCuaGUGCAag-----CGGCAGUAc -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 60163 | 0.67 | 0.929273 |
Target: 5'- uACCACcCGGUCACGUggaucaCGUgGUCAc- -3' miRNA: 3'- -UGGUGcGCUAGUGCAa-----GCGgCAGUac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 108845 | 0.67 | 0.918193 |
Target: 5'- -gCGCGCGG--GCGacaCGCCGUCGUGc -3' miRNA: 3'- ugGUGCGCUagUGCaa-GCGGCAGUAC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 83616 | 0.67 | 0.917613 |
Target: 5'- uCCACGCGAuccacagcgcuggUCGCGUUgcUGCUGUCcauUGa -3' miRNA: 3'- uGGUGCGCU-------------AGUGCAA--GCGGCAGu--AC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 88952 | 0.67 | 0.912284 |
Target: 5'- gACCGCGCGGagGCGgagggCGCgGUCccGg -3' miRNA: 3'- -UGGUGCGCUagUGCaa---GCGgCAGuaC- -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 38358 | 0.67 | 0.90613 |
Target: 5'- cGCgAgGCGcgCGCGgcCGCCGUCGc- -3' miRNA: 3'- -UGgUgCGCuaGUGCaaGCGGCAGUac -5' |
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25637 | 5' | -54 | NC_005337.1 | + | 6655 | 0.68 | 0.899734 |
Target: 5'- cGCCGCGCGGUaCAa---CGCCGUCu-- -3' miRNA: 3'- -UGGUGCGCUA-GUgcaaGCGGCAGuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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