miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 24064 0.67 0.844731
Target:  5'- -cGCGGCCgCGGCCGCGg--CCGCCa -3'
miRNA:   3'- cuUGCUGGaGUUGGCGUacgGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 66299 0.67 0.852751
Target:  5'- --cCGAcCCUgGACCGCGUGagCGCCGc -3'
miRNA:   3'- cuuGCU-GGAgUUGGCGUACggGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 120900 0.67 0.847963
Target:  5'- ---aGGCCUCGgagggaugucugaacGCCGCGUGuCCCGgCGc -3'
miRNA:   3'- cuugCUGGAGU---------------UGGCGUAC-GGGUgGC- -5'
25638 3' -55.8 NC_005337.1 + 54247 0.67 0.844731
Target:  5'- cAGCGugUUCAccacggacuACCGgGUGCCgACCa -3'
miRNA:   3'- cUUGCugGAGU---------UGGCgUACGGgUGGc -5'
25638 3' -55.8 NC_005337.1 + 133587 0.67 0.836515
Target:  5'- cGAGCuucGCCUCcGCgCGCAaggGCCCGCUGc -3'
miRNA:   3'- -CUUGc--UGGAGuUG-GCGUa--CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 97784 0.67 0.836515
Target:  5'- cGAGCG-CCgCGGCCGCG-GCCagGCCGu -3'
miRNA:   3'- -CUUGCuGGaGUUGGCGUaCGGg-UGGC- -5'
25638 3' -55.8 NC_005337.1 + 50946 0.67 0.860568
Target:  5'- gGGGCG-CCUCGcGCCGC--GCCCcuaGCCGg -3'
miRNA:   3'- -CUUGCuGGAGU-UGGCGuaCGGG---UGGC- -5'
25638 3' -55.8 NC_005337.1 + 73363 0.67 0.828109
Target:  5'- -cGCGugCcCGACCGUggccGUGCCCGCa- -3'
miRNA:   3'- cuUGCugGaGUUGGCG----UACGGGUGgc -5'
25638 3' -55.8 NC_005337.1 + 133269 0.67 0.844731
Target:  5'- cGACGGCCUcCAGgCGac-GCCCGCCc -3'
miRNA:   3'- cUUGCUGGA-GUUgGCguaCGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 35097 0.67 0.852751
Target:  5'- ---gGAUCUCGACgCGCAUcGUCCGCgCGg -3'
miRNA:   3'- cuugCUGGAGUUG-GCGUA-CGGGUG-GC- -5'
25638 3' -55.8 NC_005337.1 + 98533 0.67 0.852751
Target:  5'- gGAGCccGCCcgaCGGCCGCGUGCUUGCCa -3'
miRNA:   3'- -CUUGc-UGGa--GUUGGCGUACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 61228 0.67 0.828109
Target:  5'- uGGCGAUggaCAGCCGCAgcgUGCCCuCCGu -3'
miRNA:   3'- cUUGCUGga-GUUGGCGU---ACGGGuGGC- -5'
25638 3' -55.8 NC_005337.1 + 52011 0.67 0.836515
Target:  5'- -cACGACCUCGaacgcGCCGCuc-UCCAUCGg -3'
miRNA:   3'- cuUGCUGGAGU-----UGGCGuacGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 9472 0.67 0.868174
Target:  5'- cGGCG-CgUCcACCGCcgGCCCAUCu -3'
miRNA:   3'- cUUGCuGgAGuUGGCGuaCGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 49377 0.67 0.868174
Target:  5'- cGGCGACC---GCCGCAccGCCCcCCGc -3'
miRNA:   3'- cUUGCUGGaguUGGCGUa-CGGGuGGC- -5'
25638 3' -55.8 NC_005337.1 + 56968 0.67 0.868174
Target:  5'- ---gGACCcCGACUGCGUGCaggCCAUCGu -3'
miRNA:   3'- cuugCUGGaGUUGGCGUACG---GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 16066 0.67 0.860568
Target:  5'- uGAUGACgUCGGgcggcuCCGC--GCCCACCGg -3'
miRNA:   3'- cUUGCUGgAGUU------GGCGuaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 24504 0.67 0.860568
Target:  5'- cGGCGACgcgCUCgAGCC-CGUGCCCaaGCCGg -3'
miRNA:   3'- cUUGCUG---GAG-UUGGcGUACGGG--UGGC- -5'
25638 3' -55.8 NC_005337.1 + 50915 0.67 0.860568
Target:  5'- cAGCGGCCgguccgCAGCCaGUcgGCCUcCCGg -3'
miRNA:   3'- cUUGCUGGa-----GUUGG-CGuaCGGGuGGC- -5'
25638 3' -55.8 NC_005337.1 + 46137 0.67 0.852751
Target:  5'- cGGGCGGCaccaggagaUCGAgCGCGUGCuCUACCu -3'
miRNA:   3'- -CUUGCUGg--------AGUUgGCGUACG-GGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.