miRNA display CGI


Results 81 - 100 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 123221 0.67 0.836515
Target:  5'- ---gGGCUUCGuccuCUGCAgacagcUGCCCGCCGg -3'
miRNA:   3'- cuugCUGGAGUu---GGCGU------ACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 61228 0.67 0.828109
Target:  5'- uGGCGAUggaCAGCCGCAgcgUGCCCuCCGu -3'
miRNA:   3'- cUUGCUGga-GUUGGCGU---ACGGGuGGC- -5'
25638 3' -55.8 NC_005337.1 + 128468 0.67 0.836515
Target:  5'- ---gGACCggcgcgggaGACCGCGUGCUCGCgGg -3'
miRNA:   3'- cuugCUGGag-------UUGGCGUACGGGUGgC- -5'
25638 3' -55.8 NC_005337.1 + 16066 0.67 0.860568
Target:  5'- uGAUGACgUCGGgcggcuCCGC--GCCCACCGg -3'
miRNA:   3'- cUUGCUGgAGUU------GGCGuaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 24504 0.67 0.860568
Target:  5'- cGGCGACgcgCUCgAGCC-CGUGCCCaaGCCGg -3'
miRNA:   3'- cUUGCUG---GAG-UUGGcGUACGGG--UGGC- -5'
25638 3' -55.8 NC_005337.1 + 50915 0.67 0.860568
Target:  5'- cAGCGGCCgguccgCAGCCaGUcgGCCUcCCGg -3'
miRNA:   3'- cUUGCUGGa-----GUUGG-CGuaCGGGuGGC- -5'
25638 3' -55.8 NC_005337.1 + 46137 0.67 0.852751
Target:  5'- cGGGCGGCaccaggagaUCGAgCGCGUGCuCUACCu -3'
miRNA:   3'- -CUUGCUGg--------AGUUgGCGUACG-GGUGGc -5'
25638 3' -55.8 NC_005337.1 + 89046 0.68 0.774156
Target:  5'- cGACGAgCUCGaagGCCGC--GUCCGCCGc -3'
miRNA:   3'- cUUGCUgGAGU---UGGCGuaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 103196 0.68 0.775098
Target:  5'- cGACGACaugcuccgugucggCAACUGCAUgGCCCGCUGc -3'
miRNA:   3'- cUUGCUGga------------GUUGGCGUA-CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 52121 0.68 0.801835
Target:  5'- cGGACGugGCCgCcACCGUGUGCgCCGCCa -3'
miRNA:   3'- -CUUGC--UGGaGuUGGCGUACG-GGUGGc -5'
25638 3' -55.8 NC_005337.1 + 46000 0.68 0.810761
Target:  5'- --uCGGCCaugUCcuCCGCGgcGCCCGCCGg -3'
miRNA:   3'- cuuGCUGG---AGuuGGCGUa-CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 52308 0.68 0.777919
Target:  5'- -cAUGACgCUCAACgGCAucauguaccggcucaUGUCCGCCGu -3'
miRNA:   3'- cuUGCUG-GAGUUGgCGU---------------ACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 41004 0.68 0.819522
Target:  5'- cGGCGGCCagGAugucCCGCuugagGCCCGCCa -3'
miRNA:   3'- cUUGCUGGagUU----GGCGua---CGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 128457 0.68 0.801835
Target:  5'- -uACGACCUCugcagcgcuugcGACUGCAUcGuCCCugCGg -3'
miRNA:   3'- cuUGCUGGAG------------UUGGCGUA-C-GGGugGC- -5'
25638 3' -55.8 NC_005337.1 + 127833 0.68 0.816911
Target:  5'- gGAGCGuCgUCGACCGCAcgccgcuccacaucUGCCuCACgGg -3'
miRNA:   3'- -CUUGCuGgAGUUGGCGU--------------ACGG-GUGgC- -5'
25638 3' -55.8 NC_005337.1 + 7874 0.68 0.819522
Target:  5'- cGGGCGGCCUUGGCCGUga--UCACCGu -3'
miRNA:   3'- -CUUGCUGGAGUUGGCGuacgGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 129254 0.68 0.810761
Target:  5'- -uACGugCUCAacGCCGaCGUGCUCgACCu -3'
miRNA:   3'- cuUGCugGAGU--UGGC-GUACGGG-UGGc -5'
25638 3' -55.8 NC_005337.1 + 99429 0.68 0.810761
Target:  5'- -uGCGugCUgAGCCGCGgcgugGgCCACCu -3'
miRNA:   3'- cuUGCugGAgUUGGCGUa----CgGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 63946 0.68 0.819522
Target:  5'- gGAACGccguCUUCGugCGCGUGCaCCGCg- -3'
miRNA:   3'- -CUUGCu---GGAGUugGCGUACG-GGUGgc -5'
25638 3' -55.8 NC_005337.1 + 2003 0.68 0.810761
Target:  5'- cGGACGACCgCAGCaGCAcGgCCAUCGg -3'
miRNA:   3'- -CUUGCUGGaGUUGgCGUaCgGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.