Results 101 - 120 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
25638 | 3' | -55.8 | NC_005337.1 | + | 7874 | 0.68 | 0.819522 |
Target: 5'- cGGGCGGCCUUGGCCGUga--UCACCGu -3' miRNA: 3'- -CUUGCUGGAGUUGGCGuacgGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 1848 | 0.68 | 0.783523 |
Target: 5'- cGAGCGcGCaguuggUGGCCGCGUGUCCGCUGu -3' miRNA: 3'- -CUUGC-UGga----GUUGGCGUACGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 52308 | 0.68 | 0.777919 |
Target: 5'- -cAUGACgCUCAACgGCAucauguaccggcucaUGUCCGCCGu -3' miRNA: 3'- cuUGCUG-GAGUUGgCGU---------------ACGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 127833 | 0.68 | 0.816911 |
Target: 5'- gGAGCGuCgUCGACCGCAcgccgcuccacaucUGCCuCACgGg -3' miRNA: 3'- -CUUGCuGgAGUUGGCGU--------------ACGG-GUGgC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 129254 | 0.68 | 0.810761 |
Target: 5'- -uACGugCUCAacGCCGaCGUGCUCgACCu -3' miRNA: 3'- cuUGCugGAGU--UGGC-GUACGGG-UGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 76985 | 0.68 | 0.792753 |
Target: 5'- aGAGCGGCgCcgCAGCCGCGcgcGCCgGCCc -3' miRNA: 3'- -CUUGCUG-Ga-GUUGGCGUa--CGGgUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 99429 | 0.68 | 0.810761 |
Target: 5'- -uGCGugCUgAGCCGCGgcgugGgCCACCu -3' miRNA: 3'- cuUGCugGAgUUGGCGUa----CgGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 46000 | 0.68 | 0.810761 |
Target: 5'- --uCGGCCaugUCcuCCGCGgcGCCCGCCGg -3' miRNA: 3'- cuuGCUGG---AGuuGGCGUa-CGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 2003 | 0.68 | 0.810761 |
Target: 5'- cGGACGACCgCAGCaGCAcGgCCAUCGg -3' miRNA: 3'- -CUUGCUGGaGUUGgCGUaCgGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 79067 | 0.68 | 0.809876 |
Target: 5'- ---aGACCaggauguUCGugugcaggaacACgCGCAUGCCCACCGg -3' miRNA: 3'- cuugCUGG-------AGU-----------UG-GCGUACGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 21907 | 0.68 | 0.801835 |
Target: 5'- aGGACGcgcGCUUCAuggaggugGCCGCGcGCuCCGCCGa -3' miRNA: 3'- -CUUGC---UGGAGU--------UGGCGUaCG-GGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 83370 | 0.68 | 0.792753 |
Target: 5'- cGGAcCGGCCgcugGGCgCGCGcGCCCGCCGa -3' miRNA: 3'- -CUU-GCUGGag--UUG-GCGUaCGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 70709 | 0.68 | 0.789078 |
Target: 5'- cGGCGACCgcgccaaggagugCGugUGCAcggUGUCCACCGg -3' miRNA: 3'- cUUGCUGGa------------GUugGCGU---ACGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 52172 | 0.68 | 0.783523 |
Target: 5'- -cGCGGCUUCGACggcgCGCAgacgGCCgACCGc -3' miRNA: 3'- cuUGCUGGAGUUG----GCGUa---CGGgUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 126431 | 0.68 | 0.774156 |
Target: 5'- cGACGGCgCgCGugCGCGUGUaCCACCGc -3' miRNA: 3'- cUUGCUG-GaGUugGCGUACG-GGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 92713 | 0.68 | 0.774156 |
Target: 5'- cGACGACUcCAAgCGCGUGCgCCugCu -3' miRNA: 3'- cUUGCUGGaGUUgGCGUACG-GGugGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 63946 | 0.68 | 0.819522 |
Target: 5'- gGAACGccguCUUCGugCGCGUGCaCCGCg- -3' miRNA: 3'- -CUUGCu---GGAGUugGCGUACG-GGUGgc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 132965 | 0.68 | 0.770372 |
Target: 5'- ---gGACCUCcugcGCCGCcggauggacaaccUGCCCGCCGa -3' miRNA: 3'- cuugCUGGAGu---UGGCGu------------ACGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 123069 | 0.68 | 0.783523 |
Target: 5'- -uACGGCaUgAGCCGCGUGCaCCGCaCGa -3' miRNA: 3'- cuUGCUGgAgUUGGCGUACG-GGUG-GC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 103196 | 0.68 | 0.775098 |
Target: 5'- cGACGACaugcuccgugucggCAACUGCAUgGCCCGCUGc -3' miRNA: 3'- cUUGCUGga------------GUUGGCGUA-CGGGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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