Results 41 - 60 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25638 | 3' | -55.8 | NC_005337.1 | + | 29664 | 0.71 | 0.613061 |
Target: 5'- -cGCGugCUCccgcgguggcGCCGUAUGCUCGCCGc -3' miRNA: 3'- cuUGCugGAGu---------UGGCGUACGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 54052 | 0.71 | 0.613061 |
Target: 5'- --cCGACCcCGACCGCGUGCgCGCg- -3' miRNA: 3'- cuuGCUGGaGUUGGCGUACGgGUGgc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 22581 | 0.71 | 0.644036 |
Target: 5'- gGGACGACCUCuuCCGgGUcGUcgCCGCCGu -3' miRNA: 3'- -CUUGCUGGAGuuGGCgUA-CG--GGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 97192 | 0.71 | 0.644036 |
Target: 5'- cGGCGAgCUCGACCGCgccaugGUGgCCAUCGu -3' miRNA: 3'- cUUGCUgGAGUUGGCG------UACgGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 122744 | 0.71 | 0.654352 |
Target: 5'- cGGACGACCUgCGGCCacccuGCGcUGCCCGgCGc -3' miRNA: 3'- -CUUGCUGGA-GUUGG-----CGU-ACGGGUgGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 64311 | 0.71 | 0.654352 |
Target: 5'- --cCGGCgUCuugCGCGUGCCCACCa -3' miRNA: 3'- cuuGCUGgAGuugGCGUACGGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 130913 | 0.7 | 0.715562 |
Target: 5'- cGAACGACgaCAuguACCaCAUGgCCACCGg -3' miRNA: 3'- -CUUGCUGgaGU---UGGcGUACgGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 132429 | 0.7 | 0.715562 |
Target: 5'- -cGCGGCCacCAACUGCGcGCUCGCCa -3' miRNA: 3'- cuUGCUGGa-GUUGGCGUaCGGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 101957 | 0.7 | 0.705488 |
Target: 5'- cAACGACuCUCAccucaucaagcuGCCGC-UGCUCAUCGg -3' miRNA: 3'- cUUGCUG-GAGU------------UGGCGuACGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 1760 | 0.7 | 0.69535 |
Target: 5'- aGGAcCGACCagGGCgGCAU-CCCGCCGg -3' miRNA: 3'- -CUU-GCUGGagUUGgCGUAcGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 122806 | 0.7 | 0.69535 |
Target: 5'- -cGCGGCCaUCGACCGCAgcgUGCgCGuCCGc -3' miRNA: 3'- cuUGCUGG-AGUUGGCGU---ACGgGU-GGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 98155 | 0.7 | 0.714558 |
Target: 5'- uGGCGGCCUuccccgaCGACCGCGUGaccuCCAUCGu -3' miRNA: 3'- cUUGCUGGA-------GUUGGCGUACg---GGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 63475 | 0.7 | 0.715562 |
Target: 5'- cGAUGACgCUCAccagccGCCGCAUGgCCuCCGa -3' miRNA: 3'- cUUGCUG-GAGU------UGGCGUACgGGuGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 19615 | 0.7 | 0.705488 |
Target: 5'- aGGCGGCCUCGAggcCCGC--GUUCACCGg -3' miRNA: 3'- cUUGCUGGAGUU---GGCGuaCGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 129863 | 0.7 | 0.69535 |
Target: 5'- uGAACGugCUCAACCcucgauacgGCAU-CUCGCCGc -3' miRNA: 3'- -CUUGCugGAGUUGG---------CGUAcGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 92840 | 0.7 | 0.69535 |
Target: 5'- cGAGCGAgCUCAACaaaCGCGUGgUCAUCGu -3' miRNA: 3'- -CUUGCUgGAGUUG---GCGUACgGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 110219 | 0.7 | 0.705488 |
Target: 5'- -cGCGGCCgCGGCCGCGUcGCCCGa-- -3' miRNA: 3'- cuUGCUGGaGUUGGCGUA-CGGGUggc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 100217 | 0.69 | 0.735485 |
Target: 5'- cGACGGCCggcgccgCGugCGCGUgaucgcggucccGCCCGCCa -3' miRNA: 3'- cUUGCUGGa------GUugGCGUA------------CGGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 68195 | 0.69 | 0.764658 |
Target: 5'- -cGCGGCCcCGggggcGCCGCugcggGCCCGCCu -3' miRNA: 3'- cuUGCUGGaGU-----UGGCGua---CGGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 23321 | 0.69 | 0.745313 |
Target: 5'- -cGCGGCCgcgCAGCUGCGcacGCCCAaCCa -3' miRNA: 3'- cuUGCUGGa--GUUGGCGUa--CGGGU-GGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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