miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 38157 0.69 0.725565
Target:  5'- -cGCGGCauccugcgCGGCCGCAUGUCCuCCGc -3'
miRNA:   3'- cuUGCUGga------GUUGGCGUACGGGuGGC- -5'
25638 3' -55.8 NC_005337.1 + 68195 0.69 0.764658
Target:  5'- -cGCGGCCcCGggggcGCCGCugcggGCCCGCCu -3'
miRNA:   3'- cuUGCUGGaGU-----UGGCGua---CGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 105287 0.69 0.764658
Target:  5'- uGGGCGGCC---GCCGC-UGCCCGCa- -3'
miRNA:   3'- -CUUGCUGGaguUGGCGuACGGGUGgc -5'
25638 3' -55.8 NC_005337.1 + 54480 0.69 0.764658
Target:  5'- aGGACGACCUCGgcACCGUgaagGaCCCGCg- -3'
miRNA:   3'- -CUUGCUGGAGU--UGGCGua--C-GGGUGgc -5'
25638 3' -55.8 NC_005337.1 + 36487 0.69 0.764658
Target:  5'- -cACGGCCUUGGCCGCG-GCCgCGgCGc -3'
miRNA:   3'- cuUGCUGGAGUUGGCGUaCGG-GUgGC- -5'
25638 3' -55.8 NC_005337.1 + 3008 0.69 0.755041
Target:  5'- cGGACGGgCUcCGGCagCGCGUGCgCGCCGa -3'
miRNA:   3'- -CUUGCUgGA-GUUG--GCGUACGgGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 127167 0.69 0.745313
Target:  5'- ---aGACUUCGACUGCGUcGCugCCACCGc -3'
miRNA:   3'- cuugCUGGAGUUGGCGUA-CG--GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 73320 0.69 0.745313
Target:  5'- uGGGCGcgcGCCcCAugCGCAUGCCgGCgCGg -3'
miRNA:   3'- -CUUGC---UGGaGUugGCGUACGGgUG-GC- -5'
25638 3' -55.8 NC_005337.1 + 123934 0.69 0.745313
Target:  5'- cGGCGGCgaCGGCCGCGUGCagcuCCACUc -3'
miRNA:   3'- cUUGCUGgaGUUGGCGUACG----GGUGGc -5'
25638 3' -55.8 NC_005337.1 + 55995 0.69 0.755041
Target:  5'- cGGGCGACCUCGcUgGCGggGCUCAUCGc -3'
miRNA:   3'- -CUUGCUGGAGUuGgCGUa-CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 63946 0.68 0.819522
Target:  5'- gGAACGccguCUUCGugCGCGUGCaCCGCg- -3'
miRNA:   3'- -CUUGCu---GGAGUugGCGUACG-GGUGgc -5'
25638 3' -55.8 NC_005337.1 + 79067 0.68 0.809876
Target:  5'- ---aGACCaggauguUCGugugcaggaacACgCGCAUGCCCACCGg -3'
miRNA:   3'- cuugCUGG-------AGU-----------UG-GCGUACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 127833 0.68 0.816911
Target:  5'- gGAGCGuCgUCGACCGCAcgccgcuccacaucUGCCuCACgGg -3'
miRNA:   3'- -CUUGCuGgAGUUGGCGU--------------ACGG-GUGgC- -5'
25638 3' -55.8 NC_005337.1 + 129254 0.68 0.810761
Target:  5'- -uACGugCUCAacGCCGaCGUGCUCgACCu -3'
miRNA:   3'- cuUGCugGAGU--UGGC-GUACGGG-UGGc -5'
25638 3' -55.8 NC_005337.1 + 99429 0.68 0.810761
Target:  5'- -uGCGugCUgAGCCGCGgcgugGgCCACCu -3'
miRNA:   3'- cuUGCugGAgUUGGCGUa----CgGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 41004 0.68 0.819522
Target:  5'- cGGCGGCCagGAugucCCGCuugagGCCCGCCa -3'
miRNA:   3'- cUUGCUGGagUU----GGCGua---CGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 46000 0.68 0.810761
Target:  5'- --uCGGCCaugUCcuCCGCGgcGCCCGCCGg -3'
miRNA:   3'- cuuGCUGG---AGuuGGCGUa-CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 34744 0.68 0.774156
Target:  5'- --gUGACCUUGGCCuCGuUGCCCGCCc -3'
miRNA:   3'- cuuGCUGGAGUUGGcGU-ACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 2003 0.68 0.810761
Target:  5'- cGGACGACCgCAGCaGCAcGgCCAUCGg -3'
miRNA:   3'- -CUUGCUGGaGUUGgCGUaCgGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 21907 0.68 0.801835
Target:  5'- aGGACGcgcGCUUCAuggaggugGCCGCGcGCuCCGCCGa -3'
miRNA:   3'- -CUUGC---UGGAGU--------UGGCGUaCG-GGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.