Results 81 - 100 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25638 | 3' | -55.8 | NC_005337.1 | + | 92713 | 0.68 | 0.774156 |
Target: 5'- cGACGACUcCAAgCGCGUGCgCCugCu -3' miRNA: 3'- cUUGCUGGaGUUgGCGUACG-GGugGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 34744 | 0.68 | 0.774156 |
Target: 5'- --gUGACCUUGGCCuCGuUGCCCGCCc -3' miRNA: 3'- cuuGCUGGAGUUGGcGU-ACGGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 44922 | 0.68 | 0.783523 |
Target: 5'- cAACGGCgccaUCGACCuCAUGCgCCACCu -3' miRNA: 3'- cUUGCUGg---AGUUGGcGUACG-GGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 99429 | 0.68 | 0.810761 |
Target: 5'- -uGCGugCUgAGCCGCGgcgugGgCCACCu -3' miRNA: 3'- cuUGCugGAgUUGGCGUa----CgGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 48022 | 0.68 | 0.792753 |
Target: 5'- -cACGGCCuUCGugCGCAacgcgacggUGCCCaacGCCGu -3' miRNA: 3'- cuUGCUGG-AGUugGCGU---------ACGGG---UGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 118022 | 0.68 | 0.783523 |
Target: 5'- uGAACGGCCUUuuauggacACCGCcgGCCU-CCa -3' miRNA: 3'- -CUUGCUGGAGu-------UGGCGuaCGGGuGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 85994 | 0.68 | 0.783523 |
Target: 5'- -cGCGACCgcgggucCAGCCGCAggUGCgucaCGCCGa -3' miRNA: 3'- cuUGCUGGa------GUUGGCGU--ACGg---GUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 50241 | 0.68 | 0.783523 |
Target: 5'- -uGCGcGCCUCcGCCgGUGUGuCCCGCCGc -3' miRNA: 3'- cuUGC-UGGAGuUGG-CGUAC-GGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 23660 | 0.68 | 0.783523 |
Target: 5'- gGAGgGACCUCGACCccgGCAuccUGCUCGCg- -3' miRNA: 3'- -CUUgCUGGAGUUGG---CGU---ACGGGUGgc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 63946 | 0.68 | 0.819522 |
Target: 5'- gGAACGccguCUUCGugCGCGUGCaCCGCg- -3' miRNA: 3'- -CUUGCu---GGAGUugGCGUACG-GGUGgc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 132965 | 0.68 | 0.770372 |
Target: 5'- ---gGACCUCcugcGCCGCcggauggacaaccUGCCCGCCGa -3' miRNA: 3'- cuugCUGGAGu---UGGCGu------------ACGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 56592 | 0.68 | 0.774156 |
Target: 5'- aGAGCGAguuCgUCGACCGCuuccugGCCUucGCCGg -3' miRNA: 3'- -CUUGCU---GgAGUUGGCGua----CGGG--UGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 89046 | 0.68 | 0.774156 |
Target: 5'- cGACGAgCUCGaagGCCGC--GUCCGCCGc -3' miRNA: 3'- cUUGCUgGAGU---UGGCGuaCGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 109099 | 0.68 | 0.792753 |
Target: 5'- aGugGuucACgCUCAGCCGCGUGCaCCACa- -3' miRNA: 3'- cUugC---UG-GAGUUGGCGUACG-GGUGgc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 52308 | 0.68 | 0.777919 |
Target: 5'- -cAUGACgCUCAACgGCAucauguaccggcucaUGUCCGCCGu -3' miRNA: 3'- cuUGCUG-GAGUUGgCGU---------------ACGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 1848 | 0.68 | 0.783523 |
Target: 5'- cGAGCGcGCaguuggUGGCCGCGUGUCCGCUGu -3' miRNA: 3'- -CUUGC-UGga----GUUGGCGUACGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 41004 | 0.68 | 0.819522 |
Target: 5'- cGGCGGCCagGAugucCCGCuugagGCCCGCCa -3' miRNA: 3'- cUUGCUGGagUU----GGCGua---CGGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 127833 | 0.68 | 0.816911 |
Target: 5'- gGAGCGuCgUCGACCGCAcgccgcuccacaucUGCCuCACgGg -3' miRNA: 3'- -CUUGCuGgAGUUGGCGU--------------ACGG-GUGgC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 129254 | 0.68 | 0.810761 |
Target: 5'- -uACGugCUCAacGCCGaCGUGCUCgACCu -3' miRNA: 3'- cuUGCugGAGU--UGGC-GUACGGG-UGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 103196 | 0.68 | 0.775098 |
Target: 5'- cGACGACaugcuccgugucggCAACUGCAUgGCCCGCUGc -3' miRNA: 3'- cUUGCUGga------------GUUGGCGUA-CGGGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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