miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 23321 0.69 0.745313
Target:  5'- -cGCGGCCgcgCAGCUGCGcacGCCCAaCCa -3'
miRNA:   3'- cuUGCUGGa--GUUGGCGUa--CGGGU-GGc -5'
25638 3' -55.8 NC_005337.1 + 127167 0.69 0.745313
Target:  5'- ---aGACUUCGACUGCGUcGCugCCACCGc -3'
miRNA:   3'- cuugCUGGAGUUGGCGUA-CG--GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 73320 0.69 0.745313
Target:  5'- uGGGCGcgcGCCcCAugCGCAUGCCgGCgCGg -3'
miRNA:   3'- -CUUGC---UGGaGUugGCGUACGGgUG-GC- -5'
25638 3' -55.8 NC_005337.1 + 123934 0.69 0.745313
Target:  5'- cGGCGGCgaCGGCCGCGUGCagcuCCACUc -3'
miRNA:   3'- cUUGCUGgaGUUGGCGUACG----GGUGGc -5'
25638 3' -55.8 NC_005337.1 + 55995 0.69 0.755041
Target:  5'- cGGGCGACCUCGcUgGCGggGCUCAUCGc -3'
miRNA:   3'- -CUUGCUGGAGUuGgCGUa-CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 3008 0.69 0.755041
Target:  5'- cGGACGGgCUcCGGCagCGCGUGCgCGCCGa -3'
miRNA:   3'- -CUUGCUgGA-GUUG--GCGUACGgGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 36487 0.69 0.764658
Target:  5'- -cACGGCCUUGGCCGCG-GCCgCGgCGc -3'
miRNA:   3'- cuUGCUGGAGUUGGCGUaCGG-GUgGC- -5'
25638 3' -55.8 NC_005337.1 + 68195 0.69 0.764658
Target:  5'- -cGCGGCCcCGggggcGCCGCugcggGCCCGCCu -3'
miRNA:   3'- cuUGCUGGaGU-----UGGCGua---CGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 105287 0.69 0.764658
Target:  5'- uGGGCGGCC---GCCGC-UGCCCGCa- -3'
miRNA:   3'- -CUUGCUGGaguUGGCGuACGGGUGgc -5'
25638 3' -55.8 NC_005337.1 + 54480 0.69 0.764658
Target:  5'- aGGACGACCUCGgcACCGUgaagGaCCCGCg- -3'
miRNA:   3'- -CUUGCUGGAGU--UGGCGua--C-GGGUGgc -5'
25638 3' -55.8 NC_005337.1 + 132965 0.68 0.770372
Target:  5'- ---gGACCUCcugcGCCGCcggauggacaaccUGCCCGCCGa -3'
miRNA:   3'- cuugCUGGAGu---UGGCGu------------ACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 89046 0.68 0.774156
Target:  5'- cGACGAgCUCGaagGCCGC--GUCCGCCGc -3'
miRNA:   3'- cUUGCUgGAGU---UGGCGuaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 56592 0.68 0.774156
Target:  5'- aGAGCGAguuCgUCGACCGCuuccugGCCUucGCCGg -3'
miRNA:   3'- -CUUGCU---GgAGUUGGCGua----CGGG--UGGC- -5'
25638 3' -55.8 NC_005337.1 + 92713 0.68 0.774156
Target:  5'- cGACGACUcCAAgCGCGUGCgCCugCu -3'
miRNA:   3'- cUUGCUGGaGUUgGCGUACG-GGugGc -5'
25638 3' -55.8 NC_005337.1 + 34744 0.68 0.774156
Target:  5'- --gUGACCUUGGCCuCGuUGCCCGCCc -3'
miRNA:   3'- cuuGCUGGAGUUGGcGU-ACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 126431 0.68 0.774156
Target:  5'- cGACGGCgCgCGugCGCGUGUaCCACCGc -3'
miRNA:   3'- cUUGCUG-GaGUugGCGUACG-GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 103196 0.68 0.775098
Target:  5'- cGACGACaugcuccgugucggCAACUGCAUgGCCCGCUGc -3'
miRNA:   3'- cUUGCUGga------------GUUGGCGUA-CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 52308 0.68 0.777919
Target:  5'- -cAUGACgCUCAACgGCAucauguaccggcucaUGUCCGCCGu -3'
miRNA:   3'- cuUGCUG-GAGUUGgCGU---------------ACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 123069 0.68 0.783523
Target:  5'- -uACGGCaUgAGCCGCGUGCaCCGCaCGa -3'
miRNA:   3'- cuUGCUGgAgUUGGCGUACG-GGUG-GC- -5'
25638 3' -55.8 NC_005337.1 + 52172 0.68 0.783523
Target:  5'- -cGCGGCUUCGACggcgCGCAgacgGCCgACCGc -3'
miRNA:   3'- cuUGCUGGAGUUG----GCGUa---CGGgUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.