miRNA display CGI


Results 81 - 100 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 23660 0.68 0.783523
Target:  5'- gGAGgGACCUCGACCccgGCAuccUGCUCGCg- -3'
miRNA:   3'- -CUUgCUGGAGUUGG---CGU---ACGGGUGgc -5'
25638 3' -55.8 NC_005337.1 + 118022 0.68 0.783523
Target:  5'- uGAACGGCCUUuuauggacACCGCcgGCCU-CCa -3'
miRNA:   3'- -CUUGCUGGAGu-------UGGCGuaCGGGuGGc -5'
25638 3' -55.8 NC_005337.1 + 52172 0.68 0.783523
Target:  5'- -cGCGGCUUCGACggcgCGCAgacgGCCgACCGc -3'
miRNA:   3'- cuUGCUGGAGUUG----GCGUa---CGGgUGGC- -5'
25638 3' -55.8 NC_005337.1 + 123069 0.68 0.783523
Target:  5'- -uACGGCaUgAGCCGCGUGCaCCGCaCGa -3'
miRNA:   3'- cuUGCUGgAgUUGGCGUACG-GGUG-GC- -5'
25638 3' -55.8 NC_005337.1 + 44922 0.68 0.783523
Target:  5'- cAACGGCgccaUCGACCuCAUGCgCCACCu -3'
miRNA:   3'- cUUGCUGg---AGUUGGcGUACG-GGUGGc -5'
25638 3' -55.8 NC_005337.1 + 50241 0.68 0.783523
Target:  5'- -uGCGcGCCUCcGCCgGUGUGuCCCGCCGc -3'
miRNA:   3'- cuUGC-UGGAGuUGG-CGUAC-GGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 70709 0.68 0.789078
Target:  5'- cGGCGACCgcgccaaggagugCGugUGCAcggUGUCCACCGg -3'
miRNA:   3'- cUUGCUGGa------------GUugGCGU---ACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 109099 0.68 0.792753
Target:  5'- aGugGuucACgCUCAGCCGCGUGCaCCACa- -3'
miRNA:   3'- cUugC---UG-GAGUUGGCGUACG-GGUGgc -5'
25638 3' -55.8 NC_005337.1 + 53765 0.68 0.792753
Target:  5'- ---gGGCCUCG---GCGUGCCCGCCc -3'
miRNA:   3'- cuugCUGGAGUuggCGUACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 48022 0.68 0.792753
Target:  5'- -cACGGCCuUCGugCGCAacgcgacggUGCCCaacGCCGu -3'
miRNA:   3'- cuUGCUGG-AGUugGCGU---------ACGGG---UGGC- -5'
25638 3' -55.8 NC_005337.1 + 76985 0.68 0.792753
Target:  5'- aGAGCGGCgCcgCAGCCGCGcgcGCCgGCCc -3'
miRNA:   3'- -CUUGCUG-Ga-GUUGGCGUa--CGGgUGGc -5'
25638 3' -55.8 NC_005337.1 + 83370 0.68 0.792753
Target:  5'- cGGAcCGGCCgcugGGCgCGCGcGCCCGCCGa -3'
miRNA:   3'- -CUU-GCUGGag--UUG-GCGUaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 78228 0.68 0.792753
Target:  5'- aGAGCGugUcCAcgaACCGCAcGCCCugCa -3'
miRNA:   3'- -CUUGCugGaGU---UGGCGUaCGGGugGc -5'
25638 3' -55.8 NC_005337.1 + 21907 0.68 0.801835
Target:  5'- aGGACGcgcGCUUCAuggaggugGCCGCGcGCuCCGCCGa -3'
miRNA:   3'- -CUUGC---UGGAGU--------UGGCGUaCG-GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 52121 0.68 0.801835
Target:  5'- cGGACGugGCCgCcACCGUGUGCgCCGCCa -3'
miRNA:   3'- -CUUGC--UGGaGuUGGCGUACG-GGUGGc -5'
25638 3' -55.8 NC_005337.1 + 128457 0.68 0.801835
Target:  5'- -uACGACCUCugcagcgcuugcGACUGCAUcGuCCCugCGg -3'
miRNA:   3'- cuUGCUGGAG------------UUGGCGUA-C-GGGugGC- -5'
25638 3' -55.8 NC_005337.1 + 79067 0.68 0.809876
Target:  5'- ---aGACCaggauguUCGugugcaggaacACgCGCAUGCCCACCGg -3'
miRNA:   3'- cuugCUGG-------AGU-----------UG-GCGUACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 46000 0.68 0.810761
Target:  5'- --uCGGCCaugUCcuCCGCGgcGCCCGCCGg -3'
miRNA:   3'- cuuGCUGG---AGuuGGCGUa-CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 129254 0.68 0.810761
Target:  5'- -uACGugCUCAacGCCGaCGUGCUCgACCu -3'
miRNA:   3'- cuUGCugGAGU--UGGC-GUACGGG-UGGc -5'
25638 3' -55.8 NC_005337.1 + 99429 0.68 0.810761
Target:  5'- -uGCGugCUgAGCCGCGgcgugGgCCACCu -3'
miRNA:   3'- cuUGCugGAgUUGGCGUa----CgGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.