Results 121 - 140 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
25638 | 3' | -55.8 | NC_005337.1 | + | 101942 | 0.67 | 0.836515 |
Target: 5'- uGGACGAgCUgCGcCCGCAcgugGCCUGCCGc -3' miRNA: 3'- -CUUGCUgGA-GUuGGCGUa---CGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 128834 | 0.67 | 0.839825 |
Target: 5'- ---aGAUgCUCGACCGCGUGCUCcucugccugaccacgGCCGa -3' miRNA: 3'- cuugCUG-GAGUUGGCGUACGGG---------------UGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 59345 | 0.67 | 0.839825 |
Target: 5'- aGGACGACCacuggugcgCGGCCGCcuccggaguucuuauGUGaUCCGCCGg -3' miRNA: 3'- -CUUGCUGGa--------GUUGGCG---------------UAC-GGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 133269 | 0.67 | 0.844731 |
Target: 5'- cGACGGCCUcCAGgCGac-GCCCGCCc -3' miRNA: 3'- cUUGCUGGA-GUUgGCguaCGGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 47538 | 0.67 | 0.844731 |
Target: 5'- gGAGCggGACCUCGugggccugauGCCGCGacUGaCCACCGc -3' miRNA: 3'- -CUUG--CUGGAGU----------UGGCGU--ACgGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 120344 | 0.67 | 0.844731 |
Target: 5'- uGGACGACCUCAugaacgcguCCuucgggacccgGCGcGCCUGCCGg -3' miRNA: 3'- -CUUGCUGGAGUu--------GG-----------CGUaCGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 133269 | 0.67 | 0.844731 |
Target: 5'- cGACGGCCUcCAGgCGac-GCCCGCCc -3' miRNA: 3'- cUUGCUGGA-GUUgGCguaCGGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 24064 | 0.67 | 0.844731 |
Target: 5'- -cGCGGCCgCGGCCGCGg--CCGCCa -3' miRNA: 3'- cuUGCUGGaGUUGGCGUacgGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 124183 | 0.67 | 0.844731 |
Target: 5'- cGugGACCUCGcCCGCuucgcGCCCGgCa -3' miRNA: 3'- cUugCUGGAGUuGGCGua---CGGGUgGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 54247 | 0.67 | 0.844731 |
Target: 5'- cAGCGugUUCAccacggacuACCGgGUGCCgACCa -3' miRNA: 3'- cUUGCugGAGU---------UGGCgUACGGgUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 120900 | 0.67 | 0.847963 |
Target: 5'- ---aGGCCUCGgagggaugucugaacGCCGCGUGuCCCGgCGc -3' miRNA: 3'- cuugCUGGAGU---------------UGGCGUAC-GGGUgGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 67973 | 0.67 | 0.850366 |
Target: 5'- -cGCGGCgCUCAcgcgguccagggucGgCGCGUGCgCCACCa -3' miRNA: 3'- cuUGCUG-GAGU--------------UgGCGUACG-GGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 108968 | 0.67 | 0.852751 |
Target: 5'- -cACGcGCCggUCGACgCGCGgcccGCCCGCCGu -3' miRNA: 3'- cuUGC-UGG--AGUUG-GCGUa---CGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 35097 | 0.67 | 0.852751 |
Target: 5'- ---gGAUCUCGACgCGCAUcGUCCGCgCGg -3' miRNA: 3'- cuugCUGGAGUUG-GCGUA-CGGGUG-GC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 133230 | 0.67 | 0.852751 |
Target: 5'- --cCGGCCUC--CCGCc-GCCCGCCu -3' miRNA: 3'- cuuGCUGGAGuuGGCGuaCGGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 133230 | 0.67 | 0.852751 |
Target: 5'- --cCGGCCUC--CCGCc-GCCCGCCu -3' miRNA: 3'- cuuGCUGGAGuuGGCGuaCGGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 98533 | 0.67 | 0.852751 |
Target: 5'- gGAGCccGCCcgaCGGCCGCGUGCUUGCCa -3' miRNA: 3'- -CUUGc-UGGa--GUUGGCGUACGGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 46137 | 0.67 | 0.852751 |
Target: 5'- cGGGCGGCaccaggagaUCGAgCGCGUGCuCUACCu -3' miRNA: 3'- -CUUGCUGg--------AGUUgGCGUACG-GGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 65145 | 0.67 | 0.852751 |
Target: 5'- aGGCGGCCgccgugGACCGCG-GCUCGCCc -3' miRNA: 3'- cUUGCUGGag----UUGGCGUaCGGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 66299 | 0.67 | 0.852751 |
Target: 5'- --cCGAcCCUgGACCGCGUGagCGCCGc -3' miRNA: 3'- cuuGCU-GGAgUUGGCGUACggGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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