miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 35097 0.67 0.852751
Target:  5'- ---gGAUCUCGACgCGCAUcGUCCGCgCGg -3'
miRNA:   3'- cuugCUGGAGUUG-GCGUA-CGGGUG-GC- -5'
25638 3' -55.8 NC_005337.1 + 98533 0.67 0.852751
Target:  5'- gGAGCccGCCcgaCGGCCGCGUGCUUGCCa -3'
miRNA:   3'- -CUUGc-UGGa--GUUGGCGUACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 133230 0.67 0.852751
Target:  5'- --cCGGCCUC--CCGCc-GCCCGCCu -3'
miRNA:   3'- cuuGCUGGAGuuGGCGuaCGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 67973 0.67 0.850366
Target:  5'- -cGCGGCgCUCAcgcgguccagggucGgCGCGUGCgCCACCa -3'
miRNA:   3'- cuUGCUG-GAGU--------------UgGCGUACG-GGUGGc -5'
25638 3' -55.8 NC_005337.1 + 120900 0.67 0.847963
Target:  5'- ---aGGCCUCGgagggaugucugaacGCCGCGUGuCCCGgCGc -3'
miRNA:   3'- cuugCUGGAGU---------------UGGCGUAC-GGGUgGC- -5'
25638 3' -55.8 NC_005337.1 + 124183 0.67 0.844731
Target:  5'- cGugGACCUCGcCCGCuucgcGCCCGgCa -3'
miRNA:   3'- cUugCUGGAGUuGGCGua---CGGGUgGc -5'
25638 3' -55.8 NC_005337.1 + 54247 0.67 0.844731
Target:  5'- cAGCGugUUCAccacggacuACCGgGUGCCgACCa -3'
miRNA:   3'- cUUGCugGAGU---------UGGCgUACGGgUGGc -5'
25638 3' -55.8 NC_005337.1 + 120344 0.67 0.844731
Target:  5'- uGGACGACCUCAugaacgcguCCuucgggacccgGCGcGCCUGCCGg -3'
miRNA:   3'- -CUUGCUGGAGUu--------GG-----------CGUaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 47538 0.67 0.844731
Target:  5'- gGAGCggGACCUCGugggccugauGCCGCGacUGaCCACCGc -3'
miRNA:   3'- -CUUG--CUGGAGU----------UGGCGU--ACgGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 133269 0.67 0.844731
Target:  5'- cGACGGCCUcCAGgCGac-GCCCGCCc -3'
miRNA:   3'- cUUGCUGGA-GUUgGCguaCGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 133269 0.67 0.844731
Target:  5'- cGACGGCCUcCAGgCGac-GCCCGCCc -3'
miRNA:   3'- cUUGCUGGA-GUUgGCguaCGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 24064 0.67 0.844731
Target:  5'- -cGCGGCCgCGGCCGCGg--CCGCCa -3'
miRNA:   3'- cuUGCUGGaGUUGGCGUacgGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 59345 0.67 0.839825
Target:  5'- aGGACGACCacuggugcgCGGCCGCcuccggaguucuuauGUGaUCCGCCGg -3'
miRNA:   3'- -CUUGCUGGa--------GUUGGCG---------------UAC-GGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 128834 0.67 0.839825
Target:  5'- ---aGAUgCUCGACCGCGUGCUCcucugccugaccacgGCCGa -3'
miRNA:   3'- cuugCUG-GAGUUGGCGUACGGG---------------UGGC- -5'
25638 3' -55.8 NC_005337.1 + 101942 0.67 0.836515
Target:  5'- uGGACGAgCUgCGcCCGCAcgugGCCUGCCGc -3'
miRNA:   3'- -CUUGCUgGA-GUuGGCGUa---CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 18810 0.67 0.836515
Target:  5'- ---gGGCUUCAGgCGCAUGUCUccgGCCGa -3'
miRNA:   3'- cuugCUGGAGUUgGCGUACGGG---UGGC- -5'
25638 3' -55.8 NC_005337.1 + 123221 0.67 0.836515
Target:  5'- ---gGGCUUCGuccuCUGCAgacagcUGCCCGCCGg -3'
miRNA:   3'- cuugCUGGAGUu---GGCGU------ACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 133587 0.67 0.836515
Target:  5'- cGAGCuucGCCUCcGCgCGCAaggGCCCGCUGc -3'
miRNA:   3'- -CUUGc--UGGAGuUG-GCGUa--CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 66665 0.67 0.836515
Target:  5'- uGAugGACgUCuucgacgagAACCGCAUGgCCGCgGu -3'
miRNA:   3'- -CUugCUGgAG---------UUGGCGUACgGGUGgC- -5'
25638 3' -55.8 NC_005337.1 + 128468 0.67 0.836515
Target:  5'- ---gGACCggcgcgggaGACCGCGUGCUCGCgGg -3'
miRNA:   3'- cuugCUGGag-------UUGGCGUACGGGUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.