Results 81 - 100 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25638 | 3' | -55.8 | NC_005337.1 | + | 66665 | 0.67 | 0.836515 |
Target: 5'- uGAugGACgUCuucgacgagAACCGCAUGgCCGCgGu -3' miRNA: 3'- -CUugCUGgAG---------UUGGCGUACgGGUGgC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 132149 | 0.67 | 0.836515 |
Target: 5'- uGGugGugCUgAACCGC-UGCCaCACgGa -3' miRNA: 3'- -CUugCugGAgUUGGCGuACGG-GUGgC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 128468 | 0.67 | 0.836515 |
Target: 5'- ---gGACCggcgcgggaGACCGCGUGCUCGCgGg -3' miRNA: 3'- cuugCUGGag-------UUGGCGUACGGGUGgC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 52011 | 0.67 | 0.836515 |
Target: 5'- -cACGACCUCGaacgcGCCGCuc-UCCAUCGg -3' miRNA: 3'- cuUGCUGGAGU-----UGGCGuacGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 133587 | 0.67 | 0.836515 |
Target: 5'- cGAGCuucGCCUCcGCgCGCAaggGCCCGCUGc -3' miRNA: 3'- -CUUGc--UGGAGuUG-GCGUa--CGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 73363 | 0.67 | 0.828109 |
Target: 5'- -cGCGugCcCGACCGUggccGUGCCCGCa- -3' miRNA: 3'- cuUGCugGaGUUGGCG----UACGGGUGgc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 61228 | 0.67 | 0.828109 |
Target: 5'- uGGCGAUggaCAGCCGCAgcgUGCCCuCCGu -3' miRNA: 3'- cUUGCUGga-GUUGGCGU---ACGGGuGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 120855 | 0.68 | 0.819522 |
Target: 5'- ---aGugCUCGcUgGCGUGUCCGCCGg -3' miRNA: 3'- cuugCugGAGUuGgCGUACGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 132157 | 0.68 | 0.819522 |
Target: 5'- aGAACG-CCgcuGCaCGCGUGCCUgACCGg -3' miRNA: 3'- -CUUGCuGGaguUG-GCGUACGGG-UGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 63946 | 0.68 | 0.819522 |
Target: 5'- gGAACGccguCUUCGugCGCGUGCaCCGCg- -3' miRNA: 3'- -CUUGCu---GGAGUugGCGUACG-GGUGgc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 41004 | 0.68 | 0.819522 |
Target: 5'- cGGCGGCCagGAugucCCGCuugagGCCCGCCa -3' miRNA: 3'- cUUGCUGGagUU----GGCGua---CGGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 7874 | 0.68 | 0.819522 |
Target: 5'- cGGGCGGCCUUGGCCGUga--UCACCGu -3' miRNA: 3'- -CUUGCUGGAGUUGGCGuacgGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 50188 | 0.68 | 0.819522 |
Target: 5'- cGGACGGCCgCAACC-CucugGCuCCGCCGc -3' miRNA: 3'- -CUUGCUGGaGUUGGcGua--CG-GGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 127833 | 0.68 | 0.816911 |
Target: 5'- gGAGCGuCgUCGACCGCAcgccgcuccacaucUGCCuCACgGg -3' miRNA: 3'- -CUUGCuGgAGUUGGCGU--------------ACGG-GUGgC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 2003 | 0.68 | 0.810761 |
Target: 5'- cGGACGACCgCAGCaGCAcGgCCAUCGg -3' miRNA: 3'- -CUUGCUGGaGUUGgCGUaCgGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 129254 | 0.68 | 0.810761 |
Target: 5'- -uACGugCUCAacGCCGaCGUGCUCgACCu -3' miRNA: 3'- cuUGCugGAGU--UGGC-GUACGGG-UGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 46000 | 0.68 | 0.810761 |
Target: 5'- --uCGGCCaugUCcuCCGCGgcGCCCGCCGg -3' miRNA: 3'- cuuGCUGG---AGuuGGCGUa-CGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 99429 | 0.68 | 0.810761 |
Target: 5'- -uGCGugCUgAGCCGCGgcgugGgCCACCu -3' miRNA: 3'- cuUGCugGAgUUGGCGUa----CgGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 79067 | 0.68 | 0.809876 |
Target: 5'- ---aGACCaggauguUCGugugcaggaacACgCGCAUGCCCACCGg -3' miRNA: 3'- cuugCUGG-------AGU-----------UG-GCGUACGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 128457 | 0.68 | 0.801835 |
Target: 5'- -uACGACCUCugcagcgcuugcGACUGCAUcGuCCCugCGg -3' miRNA: 3'- cuUGCUGGAG------------UUGGCGUA-C-GGGugGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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