miRNA display CGI


Results 101 - 120 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 21907 0.68 0.801835
Target:  5'- aGGACGcgcGCUUCAuggaggugGCCGCGcGCuCCGCCGa -3'
miRNA:   3'- -CUUGC---UGGAGU--------UGGCGUaCG-GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 52121 0.68 0.801835
Target:  5'- cGGACGugGCCgCcACCGUGUGCgCCGCCa -3'
miRNA:   3'- -CUUGC--UGGaGuUGGCGUACG-GGUGGc -5'
25638 3' -55.8 NC_005337.1 + 53765 0.68 0.792753
Target:  5'- ---gGGCCUCG---GCGUGCCCGCCc -3'
miRNA:   3'- cuugCUGGAGUuggCGUACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 48022 0.68 0.792753
Target:  5'- -cACGGCCuUCGugCGCAacgcgacggUGCCCaacGCCGu -3'
miRNA:   3'- cuUGCUGG-AGUugGCGU---------ACGGG---UGGC- -5'
25638 3' -55.8 NC_005337.1 + 83370 0.68 0.792753
Target:  5'- cGGAcCGGCCgcugGGCgCGCGcGCCCGCCGa -3'
miRNA:   3'- -CUU-GCUGGag--UUG-GCGUaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 78228 0.68 0.792753
Target:  5'- aGAGCGugUcCAcgaACCGCAcGCCCugCa -3'
miRNA:   3'- -CUUGCugGaGU---UGGCGUaCGGGugGc -5'
25638 3' -55.8 NC_005337.1 + 76985 0.68 0.792753
Target:  5'- aGAGCGGCgCcgCAGCCGCGcgcGCCgGCCc -3'
miRNA:   3'- -CUUGCUG-Ga-GUUGGCGUa--CGGgUGGc -5'
25638 3' -55.8 NC_005337.1 + 109099 0.68 0.792753
Target:  5'- aGugGuucACgCUCAGCCGCGUGCaCCACa- -3'
miRNA:   3'- cUugC---UG-GAGUUGGCGUACG-GGUGgc -5'
25638 3' -55.8 NC_005337.1 + 70709 0.68 0.789078
Target:  5'- cGGCGACCgcgccaaggagugCGugUGCAcggUGUCCACCGg -3'
miRNA:   3'- cUUGCUGGa------------GUugGCGU---ACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 123069 0.68 0.783523
Target:  5'- -uACGGCaUgAGCCGCGUGCaCCGCaCGa -3'
miRNA:   3'- cuUGCUGgAgUUGGCGUACG-GGUG-GC- -5'
25638 3' -55.8 NC_005337.1 + 50241 0.68 0.783523
Target:  5'- -uGCGcGCCUCcGCCgGUGUGuCCCGCCGc -3'
miRNA:   3'- cuUGC-UGGAGuUGG-CGUAC-GGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 118022 0.68 0.783523
Target:  5'- uGAACGGCCUUuuauggacACCGCcgGCCU-CCa -3'
miRNA:   3'- -CUUGCUGGAGu-------UGGCGuaCGGGuGGc -5'
25638 3' -55.8 NC_005337.1 + 85994 0.68 0.783523
Target:  5'- -cGCGACCgcgggucCAGCCGCAggUGCgucaCGCCGa -3'
miRNA:   3'- cuUGCUGGa------GUUGGCGU--ACGg---GUGGC- -5'
25638 3' -55.8 NC_005337.1 + 44922 0.68 0.783523
Target:  5'- cAACGGCgccaUCGACCuCAUGCgCCACCu -3'
miRNA:   3'- cUUGCUGg---AGUUGGcGUACG-GGUGGc -5'
25638 3' -55.8 NC_005337.1 + 23660 0.68 0.783523
Target:  5'- gGAGgGACCUCGACCccgGCAuccUGCUCGCg- -3'
miRNA:   3'- -CUUgCUGGAGUUGG---CGU---ACGGGUGgc -5'
25638 3' -55.8 NC_005337.1 + 1848 0.68 0.783523
Target:  5'- cGAGCGcGCaguuggUGGCCGCGUGUCCGCUGu -3'
miRNA:   3'- -CUUGC-UGga----GUUGGCGUACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 52172 0.68 0.783523
Target:  5'- -cGCGGCUUCGACggcgCGCAgacgGCCgACCGc -3'
miRNA:   3'- cuUGCUGGAGUUG----GCGUa---CGGgUGGC- -5'
25638 3' -55.8 NC_005337.1 + 52308 0.68 0.777919
Target:  5'- -cAUGACgCUCAACgGCAucauguaccggcucaUGUCCGCCGu -3'
miRNA:   3'- cuUGCUG-GAGUUGgCGU---------------ACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 103196 0.68 0.775098
Target:  5'- cGACGACaugcuccgugucggCAACUGCAUgGCCCGCUGc -3'
miRNA:   3'- cUUGCUGga------------GUUGGCGUA-CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 56592 0.68 0.774156
Target:  5'- aGAGCGAguuCgUCGACCGCuuccugGCCUucGCCGg -3'
miRNA:   3'- -CUUGCU---GgAGUUGGCGua----CGGG--UGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.