miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 50946 0.67 0.860568
Target:  5'- gGGGCG-CCUCGcGCCGC--GCCCcuaGCCGg -3'
miRNA:   3'- -CUUGCuGGAGU-UGGCGuaCGGG---UGGC- -5'
25638 3' -55.8 NC_005337.1 + 51064 0.66 0.896387
Target:  5'- cAACGugCUCAugcccgucgACCGCAUGaCCuCCa -3'
miRNA:   3'- cUUGCugGAGU---------UGGCGUACgGGuGGc -5'
25638 3' -55.8 NC_005337.1 + 51733 0.66 0.882733
Target:  5'- cGAGCuGCCU-GGCgGCAggcUGCCCGCCc -3'
miRNA:   3'- -CUUGcUGGAgUUGgCGU---ACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 52011 0.67 0.836515
Target:  5'- -cACGACCUCGaacgcGCCGCuc-UCCAUCGg -3'
miRNA:   3'- cuUGCUGGAGU-----UGGCGuacGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 52121 0.68 0.801835
Target:  5'- cGGACGugGCCgCcACCGUGUGCgCCGCCa -3'
miRNA:   3'- -CUUGC--UGGaGuUGGCGUACG-GGUGGc -5'
25638 3' -55.8 NC_005337.1 + 52172 0.68 0.783523
Target:  5'- -cGCGGCUUCGACggcgCGCAgacgGCCgACCGc -3'
miRNA:   3'- cuUGCUGGAGUUG----GCGUa---CGGgUGGC- -5'
25638 3' -55.8 NC_005337.1 + 52308 0.68 0.777919
Target:  5'- -cAUGACgCUCAACgGCAucauguaccggcucaUGUCCGCCGu -3'
miRNA:   3'- cuUGCUG-GAGUUGgCGU---------------ACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 53765 0.68 0.792753
Target:  5'- ---gGGCCUCG---GCGUGCCCGCCc -3'
miRNA:   3'- cuugCUGGAGUuggCGUACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 54052 0.71 0.613061
Target:  5'- --cCGACCcCGACCGCGUGCgCGCg- -3'
miRNA:   3'- cuuGCUGGaGUUGGCGUACGgGUGgc -5'
25638 3' -55.8 NC_005337.1 + 54247 0.67 0.844731
Target:  5'- cAGCGugUUCAccacggacuACCGgGUGCCgACCa -3'
miRNA:   3'- cUUGCugGAGU---------UGGCgUACGGgUGGc -5'
25638 3' -55.8 NC_005337.1 + 54480 0.69 0.764658
Target:  5'- aGGACGACCUCGgcACCGUgaagGaCCCGCg- -3'
miRNA:   3'- -CUUGCUGGAGU--UGGCGua--C-GGGUGgc -5'
25638 3' -55.8 NC_005337.1 + 55906 0.74 0.482708
Target:  5'- cGAgGGCCUCAGCgucaCGC-UGCCCACCu -3'
miRNA:   3'- cUUgCUGGAGUUG----GCGuACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 55995 0.69 0.755041
Target:  5'- cGGGCGACCUCGcUgGCGggGCUCAUCGc -3'
miRNA:   3'- -CUUGCUGGAGUuGgCGUa-CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 56028 1.09 0.002683
Target:  5'- uGAACGACCUCAACCGCAUGCCCACCGa -3'
miRNA:   3'- -CUUGCUGGAGUUGGCGUACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 56182 0.66 0.896387
Target:  5'- ---gGACCUCAGCgCGCGgaacaaGCuCUACCGc -3'
miRNA:   3'- cuugCUGGAGUUG-GCGUa-----CG-GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 56592 0.68 0.774156
Target:  5'- aGAGCGAguuCgUCGACCGCuuccugGCCUucGCCGg -3'
miRNA:   3'- -CUUGCU---GgAGUUGGCGua----CGGG--UGGC- -5'
25638 3' -55.8 NC_005337.1 + 56850 0.8 0.208055
Target:  5'- -cACGGCUUCGugCGCAUGCaCCGCCa -3'
miRNA:   3'- cuUGCUGGAGUugGCGUACG-GGUGGc -5'
25638 3' -55.8 NC_005337.1 + 56968 0.67 0.868174
Target:  5'- ---gGACCcCGACUGCGUGCaggCCAUCGu -3'
miRNA:   3'- cuugCUGGaGUUGGCGUACG---GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 57424 0.66 0.889676
Target:  5'- cGGACGcCCgucCAucuACCGCGUGCgcgugcgcauCCACCGc -3'
miRNA:   3'- -CUUGCuGGa--GU---UGGCGUACG----------GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 57540 0.66 0.896387
Target:  5'- ---gGGCCUgGACCGCAUGCacgggCUGCUGc -3'
miRNA:   3'- cuugCUGGAgUUGGCGUACG-----GGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.