miRNA display CGI


Results 81 - 100 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 58018 0.66 0.89373
Target:  5'- cGGGCGugCUCGGCCaggccgcGCucuucgacggcggcGUGCUCGCCa -3'
miRNA:   3'- -CUUGCugGAGUUGG-------CG--------------UACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 58441 0.73 0.502031
Target:  5'- aGACGAUCagcggCGACCGCAUGaccuCCGCCGa -3'
miRNA:   3'- cUUGCUGGa----GUUGGCGUACg---GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 59159 0.72 0.602755
Target:  5'- --uCGACCUCcGCCGCGcUGgUCACCGu -3'
miRNA:   3'- cuuGCUGGAGuUGGCGU-ACgGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 59345 0.67 0.839825
Target:  5'- aGGACGACCacuggugcgCGGCCGCcuccggaguucuuauGUGaUCCGCCGg -3'
miRNA:   3'- -CUUGCUGGa--------GUUGGCG---------------UAC-GGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 59403 0.71 0.613061
Target:  5'- cGAUGGCCgUGACCaGCAUGCCCGCg- -3'
miRNA:   3'- cUUGCUGGaGUUGG-CGUACGGGUGgc -5'
25638 3' -55.8 NC_005337.1 + 61228 0.67 0.828109
Target:  5'- uGGCGAUggaCAGCCGCAgcgUGCCCuCCGu -3'
miRNA:   3'- cUUGCUGga-GUUGGCGU---ACGGGuGGC- -5'
25638 3' -55.8 NC_005337.1 + 63475 0.7 0.715562
Target:  5'- cGAUGACgCUCAccagccGCCGCAUGgCCuCCGa -3'
miRNA:   3'- cUUGCUG-GAGU------UGGCGUACgGGuGGC- -5'
25638 3' -55.8 NC_005337.1 + 63946 0.68 0.819522
Target:  5'- gGAACGccguCUUCGugCGCGUGCaCCGCg- -3'
miRNA:   3'- -CUUGCu---GGAGUugGCGUACG-GGUGgc -5'
25638 3' -55.8 NC_005337.1 + 64311 0.71 0.654352
Target:  5'- --cCGGCgUCuugCGCGUGCCCACCa -3'
miRNA:   3'- cuuGCUGgAGuugGCGUACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 64549 0.75 0.409361
Target:  5'- aGGACGGcaccuuCCUgGACCGCGUGgCCGCCa -3'
miRNA:   3'- -CUUGCU------GGAgUUGGCGUACgGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 65145 0.67 0.852751
Target:  5'- aGGCGGCCgccgugGACCGCG-GCUCGCCc -3'
miRNA:   3'- cUUGCUGGag----UUGGCGUaCGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 65923 0.66 0.896387
Target:  5'- -cGCGAUCgCGACCGCGccGUCCuCCGg -3'
miRNA:   3'- cuUGCUGGaGUUGGCGUa-CGGGuGGC- -5'
25638 3' -55.8 NC_005337.1 + 66299 0.67 0.852751
Target:  5'- --cCGAcCCUgGACCGCGUGagCGCCGc -3'
miRNA:   3'- cuuGCU-GGAgUUGGCGUACggGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 66665 0.67 0.836515
Target:  5'- uGAugGACgUCuucgacgagAACCGCAUGgCCGCgGu -3'
miRNA:   3'- -CUugCUGgAG---------UUGGCGUACgGGUGgC- -5'
25638 3' -55.8 NC_005337.1 + 67973 0.67 0.850366
Target:  5'- -cGCGGCgCUCAcgcgguccagggucGgCGCGUGCgCCACCa -3'
miRNA:   3'- cuUGCUG-GAGU--------------UgGCGUACG-GGUGGc -5'
25638 3' -55.8 NC_005337.1 + 68195 0.69 0.764658
Target:  5'- -cGCGGCCcCGggggcGCCGCugcggGCCCGCCu -3'
miRNA:   3'- cuUGCUGGaGU-----UGGCGua---CGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 68299 0.66 0.875564
Target:  5'- cGGCGGCgUgGACgCGCGUGCCCGa-- -3'
miRNA:   3'- cUUGCUGgAgUUG-GCGUACGGGUggc -5'
25638 3' -55.8 NC_005337.1 + 69060 0.66 0.875564
Target:  5'- -uACGACCUgGACgCG-GUGCCCGgCGu -3'
miRNA:   3'- cuUGCUGGAgUUG-GCgUACGGGUgGC- -5'
25638 3' -55.8 NC_005337.1 + 70709 0.68 0.789078
Target:  5'- cGGCGACCgcgccaaggagugCGugUGCAcggUGUCCACCGg -3'
miRNA:   3'- cUUGCUGGa------------GUugGCGU---ACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 72108 0.74 0.482708
Target:  5'- -uACGACCUCGAcggcguCCGCAUcCCCAUCGu -3'
miRNA:   3'- cuUGCUGGAGUU------GGCGUAcGGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.