miRNA display CGI


Results 101 - 120 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 73320 0.69 0.745313
Target:  5'- uGGGCGcgcGCCcCAugCGCAUGCCgGCgCGg -3'
miRNA:   3'- -CUUGC---UGGaGUugGCGUACGGgUG-GC- -5'
25638 3' -55.8 NC_005337.1 + 73363 0.67 0.828109
Target:  5'- -cGCGugCcCGACCGUggccGUGCCCGCa- -3'
miRNA:   3'- cuUGCugGaGUUGGCG----UACGGGUGgc -5'
25638 3' -55.8 NC_005337.1 + 73451 0.74 0.454419
Target:  5'- -cGCGugCUCAuCCGCGUGCacgaCACCa -3'
miRNA:   3'- cuUGCugGAGUuGGCGUACGg---GUGGc -5'
25638 3' -55.8 NC_005337.1 + 73460 0.71 0.623382
Target:  5'- -cGCGGCggu-GCCGCGUGCCCGCgGa -3'
miRNA:   3'- cuUGCUGgaguUGGCGUACGGGUGgC- -5'
25638 3' -55.8 NC_005337.1 + 74482 0.77 0.306176
Target:  5'- cGACGGCCUCGuggUCGCGUGCCggCGCCGg -3'
miRNA:   3'- cUUGCUGGAGUu--GGCGUACGG--GUGGC- -5'
25638 3' -55.8 NC_005337.1 + 75879 0.71 0.623382
Target:  5'- uGGCGGCCUCcgagaaCGUgcGCCCGCCGa -3'
miRNA:   3'- cUUGCUGGAGuug---GCGuaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 76055 0.66 0.902864
Target:  5'- cGGCGGCCUCcuCCaGCucGCCCAUCu -3'
miRNA:   3'- cUUGCUGGAGuuGG-CGuaCGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 76985 0.68 0.792753
Target:  5'- aGAGCGGCgCcgCAGCCGCGcgcGCCgGCCc -3'
miRNA:   3'- -CUUGCUG-Ga-GUUGGCGUa--CGGgUGGc -5'
25638 3' -55.8 NC_005337.1 + 78228 0.68 0.792753
Target:  5'- aGAGCGugUcCAcgaACCGCAcGCCCugCa -3'
miRNA:   3'- -CUUGCugGaGU---UGGCGUaCGGGugGc -5'
25638 3' -55.8 NC_005337.1 + 79067 0.68 0.809876
Target:  5'- ---aGACCaggauguUCGugugcaggaacACgCGCAUGCCCACCGg -3'
miRNA:   3'- cuugCUGG-------AGU-----------UG-GCGUACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 79957 0.72 0.582217
Target:  5'- uGACGGCgUC-GCCGCugGUGUCCACCa -3'
miRNA:   3'- cUUGCUGgAGuUGGCG--UACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 80084 0.74 0.463751
Target:  5'- cGGACGACgUCcgGugCGCGUGCCUgaaGCCGa -3'
miRNA:   3'- -CUUGCUGgAG--UugGCGUACGGG---UGGC- -5'
25638 3' -55.8 NC_005337.1 + 82636 0.66 0.875564
Target:  5'- uGGCGACCgcggagcgcCGACCGCA-GCUCgucGCCGa -3'
miRNA:   3'- cUUGCUGGa--------GUUGGCGUaCGGG---UGGC- -5'
25638 3' -55.8 NC_005337.1 + 82734 0.66 0.902864
Target:  5'- -cGCGGCCUCcaggcccggcAGCCGCAcGCCgaagagCGCCa -3'
miRNA:   3'- cuUGCUGGAG----------UUGGCGUaCGG------GUGGc -5'
25638 3' -55.8 NC_005337.1 + 83370 0.68 0.792753
Target:  5'- cGGAcCGGCCgcugGGCgCGCGcGCCCGCCGa -3'
miRNA:   3'- -CUU-GCUGGag--UUG-GCGUaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 84966 0.72 0.582217
Target:  5'- uGGAUGGCCUCcagguAUCGCcgGUCCGCCc -3'
miRNA:   3'- -CUUGCUGGAGu----UGGCGuaCGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 85994 0.68 0.783523
Target:  5'- -cGCGACCgcgggucCAGCCGCAggUGCgucaCGCCGa -3'
miRNA:   3'- cuUGCUGGa------GUUGGCGU--ACGg---GUGGC- -5'
25638 3' -55.8 NC_005337.1 + 86431 0.66 0.889676
Target:  5'- uGGCGuCCUCggUCGCGU-CCUugCGg -3'
miRNA:   3'- cUUGCuGGAGuuGGCGUAcGGGugGC- -5'
25638 3' -55.8 NC_005337.1 + 88804 0.78 0.278706
Target:  5'- aGAGCGGgCUCGugCGCA-GCUCACCGa -3'
miRNA:   3'- -CUUGCUgGAGUugGCGUaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 89046 0.68 0.774156
Target:  5'- cGACGAgCUCGaagGCCGC--GUCCGCCGc -3'
miRNA:   3'- cUUGCUgGAGU---UGGCGuaCGGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.