miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 118022 0.68 0.783523
Target:  5'- uGAACGGCCUUuuauggacACCGCcgGCCU-CCa -3'
miRNA:   3'- -CUUGCUGGAGu-------UGGCGuaCGGGuGGc -5'
25638 3' -55.8 NC_005337.1 + 117417 0.66 0.896387
Target:  5'- cGugGACUUCGAgaGCGUGUCCAacUCGg -3'
miRNA:   3'- cUugCUGGAGUUggCGUACGGGU--GGC- -5'
25638 3' -55.8 NC_005337.1 + 116582 0.75 0.436067
Target:  5'- --cUGACCUC-GCC-CAUGCCCGCCa -3'
miRNA:   3'- cuuGCUGGAGuUGGcGUACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 114114 0.66 0.875564
Target:  5'- --gUGGCCUCcGCCGCG-GCCUGCgGc -3'
miRNA:   3'- cuuGCUGGAGuUGGCGUaCGGGUGgC- -5'
25638 3' -55.8 NC_005337.1 + 110219 0.7 0.705488
Target:  5'- -cGCGGCCgCGGCCGCGUcGCCCGa-- -3'
miRNA:   3'- cuUGCUGGaGUUGGCGUA-CGGGUggc -5'
25638 3' -55.8 NC_005337.1 + 109099 0.68 0.792753
Target:  5'- aGugGuucACgCUCAGCCGCGUGCaCCACa- -3'
miRNA:   3'- cUugC---UG-GAGUUGGCGUACG-GGUGgc -5'
25638 3' -55.8 NC_005337.1 + 108968 0.67 0.852751
Target:  5'- -cACGcGCCggUCGACgCGCGgcccGCCCGCCGu -3'
miRNA:   3'- cuUGC-UGG--AGUUG-GCGUa---CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 106852 0.72 0.571999
Target:  5'- cGACGACC-CGGgCGCGUGCUUugCGg -3'
miRNA:   3'- cUUGCUGGaGUUgGCGUACGGGugGC- -5'
25638 3' -55.8 NC_005337.1 + 105287 0.69 0.764658
Target:  5'- uGGGCGGCC---GCCGC-UGCCCGCa- -3'
miRNA:   3'- -CUUGCUGGaguUGGCGuACGGGUGgc -5'
25638 3' -55.8 NC_005337.1 + 103196 0.68 0.775098
Target:  5'- cGACGACaugcuccgugucggCAACUGCAUgGCCCGCUGc -3'
miRNA:   3'- cUUGCUGga------------GUUGGCGUA-CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 102475 0.75 0.400688
Target:  5'- ----uACCUCGACCGCGUGCUCAgCGu -3'
miRNA:   3'- cuugcUGGAGUUGGCGUACGGGUgGC- -5'
25638 3' -55.8 NC_005337.1 + 101957 0.7 0.705488
Target:  5'- cAACGACuCUCAccucaucaagcuGCCGC-UGCUCAUCGg -3'
miRNA:   3'- cUUGCUG-GAGU------------UGGCGuACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 101942 0.67 0.836515
Target:  5'- uGGACGAgCUgCGcCCGCAcgugGCCUGCCGc -3'
miRNA:   3'- -CUUGCUgGA-GUuGGCGUa---CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 101732 0.67 0.868174
Target:  5'- aGGACauCCUCAccgugcGCCGCAcgcUGCUCACCu -3'
miRNA:   3'- -CUUGcuGGAGU------UGGCGU---ACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 100911 0.66 0.896387
Target:  5'- cGACGACUaCAugUGCAccaccgUGCgCACCGa -3'
miRNA:   3'- cUUGCUGGaGUugGCGU------ACGgGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 100217 0.69 0.735485
Target:  5'- cGACGGCCggcgccgCGugCGCGUgaucgcggucccGCCCGCCa -3'
miRNA:   3'- cUUGCUGGa------GUugGCGUA------------CGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 99429 0.68 0.810761
Target:  5'- -uGCGugCUgAGCCGCGgcgugGgCCACCu -3'
miRNA:   3'- cuUGCugGAgUUGGCGUa----CgGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 98533 0.67 0.852751
Target:  5'- gGAGCccGCCcgaCGGCCGCGUGCUUGCCa -3'
miRNA:   3'- -CUUGc-UGGa--GUUGGCGUACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 98155 0.7 0.714558
Target:  5'- uGGCGGCCUuccccgaCGACCGCGUGaccuCCAUCGu -3'
miRNA:   3'- cUUGCUGGA-------GUUGGCGUACg---GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 98021 0.66 0.874835
Target:  5'- -cGCGuaccaguguGCCUCGaagacggagacggACCGCAUGCUgGCCa -3'
miRNA:   3'- cuUGC---------UGGAGU-------------UGGCGUACGGgUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.