miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 97877 0.71 0.633709
Target:  5'- --cCGugCUCAACCGCAUGgUCAUgGa -3'
miRNA:   3'- cuuGCugGAGUUGGCGUACgGGUGgC- -5'
25638 3' -55.8 NC_005337.1 + 97784 0.67 0.836515
Target:  5'- cGAGCG-CCgCGGCCGCG-GCCagGCCGu -3'
miRNA:   3'- -CUUGCuGGaGUUGGCGUaCGGg-UGGC- -5'
25638 3' -55.8 NC_005337.1 + 97192 0.71 0.644036
Target:  5'- cGGCGAgCUCGACCGCgccaugGUGgCCAUCGu -3'
miRNA:   3'- cUUGCUgGAGUUGGCG------UACgGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 97088 0.71 0.644036
Target:  5'- -uGCGugCcCAACCGCAUGCUggUGCCGc -3'
miRNA:   3'- cuUGCugGaGUUGGCGUACGG--GUGGC- -5'
25638 3' -55.8 NC_005337.1 + 96574 0.73 0.541631
Target:  5'- uGGACGACCUCAcGCgCGCGggcGUCCACaCGg -3'
miRNA:   3'- -CUUGCUGGAGU-UG-GCGUa--CGGGUG-GC- -5'
25638 3' -55.8 NC_005337.1 + 95099 0.66 0.882733
Target:  5'- cGACGGCCUU-GCCGCAgucggcgaucaUGUCCGCgCGc -3'
miRNA:   3'- cUUGCUGGAGuUGGCGU-----------ACGGGUG-GC- -5'
25638 3' -55.8 NC_005337.1 + 93746 0.72 0.602755
Target:  5'- -cGCGcGCCgcggCGGCUGCAUGCCgCACCu -3'
miRNA:   3'- cuUGC-UGGa---GUUGGCGUACGG-GUGGc -5'
25638 3' -55.8 NC_005337.1 + 92840 0.7 0.69535
Target:  5'- cGAGCGAgCUCAACaaaCGCGUGgUCAUCGu -3'
miRNA:   3'- -CUUGCUgGAGUUG---GCGUACgGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 92713 0.68 0.774156
Target:  5'- cGACGACUcCAAgCGCGUGCgCCugCu -3'
miRNA:   3'- cUUGCUGGaGUUgGCGUACG-GGugGc -5'
25638 3' -55.8 NC_005337.1 + 91714 0.78 0.285384
Target:  5'- -cGCGGCCUcCAGCCGCA-GCCgCACCa -3'
miRNA:   3'- cuUGCUGGA-GUUGGCGUaCGG-GUGGc -5'
25638 3' -55.8 NC_005337.1 + 90877 0.71 0.613061
Target:  5'- -cGCGGCC---ACCGUcuugGUGCCCACCGc -3'
miRNA:   3'- cuUGCUGGaguUGGCG----UACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 90433 0.74 0.454419
Target:  5'- -cACGAUCUCcaccgcGCCGCcgGCCCGCUGc -3'
miRNA:   3'- cuUGCUGGAGu-----UGGCGuaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 90373 0.66 0.875564
Target:  5'- -cGCGGCCUCuucccGGCCGCgcGUGCacauCACCa -3'
miRNA:   3'- cuUGCUGGAG-----UUGGCG--UACGg---GUGGc -5'
25638 3' -55.8 NC_005337.1 + 90297 0.66 0.875564
Target:  5'- --uCGGCCUCcucGCCGCcggGCgCGCCGc -3'
miRNA:   3'- cuuGCUGGAGu--UGGCGua-CGgGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 90048 0.69 0.735485
Target:  5'- cGACGGCCUCGG-CGCucGCCCGCUc -3'
miRNA:   3'- cUUGCUGGAGUUgGCGuaCGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 89046 0.68 0.774156
Target:  5'- cGACGAgCUCGaagGCCGC--GUCCGCCGc -3'
miRNA:   3'- cUUGCUgGAGU---UGGCGuaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 88804 0.78 0.278706
Target:  5'- aGAGCGGgCUCGugCGCA-GCUCACCGa -3'
miRNA:   3'- -CUUGCUgGAGUugGCGUaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 86431 0.66 0.889676
Target:  5'- uGGCGuCCUCggUCGCGU-CCUugCGg -3'
miRNA:   3'- cUUGCuGGAGuuGGCGUAcGGGugGC- -5'
25638 3' -55.8 NC_005337.1 + 85994 0.68 0.783523
Target:  5'- -cGCGACCgcgggucCAGCCGCAggUGCgucaCGCCGa -3'
miRNA:   3'- cuUGCUGGa------GUUGGCGU--ACGg---GUGGC- -5'
25638 3' -55.8 NC_005337.1 + 84966 0.72 0.582217
Target:  5'- uGGAUGGCCUCcagguAUCGCcgGUCCGCCc -3'
miRNA:   3'- -CUUGCUGGAGu----UGGCGuaCGGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.