miRNA display CGI


Results 81 - 100 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 76985 0.68 0.792753
Target:  5'- aGAGCGGCgCcgCAGCCGCGcgcGCCgGCCc -3'
miRNA:   3'- -CUUGCUG-Ga-GUUGGCGUa--CGGgUGGc -5'
25638 3' -55.8 NC_005337.1 + 83370 0.68 0.792753
Target:  5'- cGGAcCGGCCgcugGGCgCGCGcGCCCGCCGa -3'
miRNA:   3'- -CUU-GCUGGag--UUG-GCGUaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 21907 0.68 0.801835
Target:  5'- aGGACGcgcGCUUCAuggaggugGCCGCGcGCuCCGCCGa -3'
miRNA:   3'- -CUUGC---UGGAGU--------UGGCGUaCG-GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 105287 0.69 0.764658
Target:  5'- uGGGCGGCC---GCCGC-UGCCCGCa- -3'
miRNA:   3'- -CUUGCUGGaguUGGCGuACGGGUGgc -5'
25638 3' -55.8 NC_005337.1 + 54480 0.69 0.764658
Target:  5'- aGGACGACCUCGgcACCGUgaagGaCCCGCg- -3'
miRNA:   3'- -CUUGCUGGAGU--UGGCGua--C-GGGUGgc -5'
25638 3' -55.8 NC_005337.1 + 36487 0.69 0.764658
Target:  5'- -cACGGCCUUGGCCGCG-GCCgCGgCGc -3'
miRNA:   3'- cuUGCUGGAGUUGGCGUaCGG-GUgGC- -5'
25638 3' -55.8 NC_005337.1 + 19615 0.7 0.705488
Target:  5'- aGGCGGCCUCGAggcCCGC--GUUCACCGg -3'
miRNA:   3'- cUUGCUGGAGUU---GGCGuaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 101957 0.7 0.705488
Target:  5'- cAACGACuCUCAccucaucaagcuGCCGC-UGCUCAUCGg -3'
miRNA:   3'- cUUGCUG-GAGU------------UGGCGuACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 110219 0.7 0.705488
Target:  5'- -cGCGGCCgCGGCCGCGUcGCCCGa-- -3'
miRNA:   3'- cuUGCUGGaGUUGGCGUA-CGGGUggc -5'
25638 3' -55.8 NC_005337.1 + 130913 0.7 0.715562
Target:  5'- cGAACGACgaCAuguACCaCAUGgCCACCGg -3'
miRNA:   3'- -CUUGCUGgaGU---UGGcGUACgGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 132429 0.7 0.715562
Target:  5'- -cGCGGCCacCAACUGCGcGCUCGCCa -3'
miRNA:   3'- cuUGCUGGa-GUUGGCGUaCGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 100217 0.69 0.735485
Target:  5'- cGACGGCCggcgccgCGugCGCGUgaucgcggucccGCCCGCCa -3'
miRNA:   3'- cUUGCUGGa------GUugGCGUA------------CGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 23321 0.69 0.745313
Target:  5'- -cGCGGCCgcgCAGCUGCGcacGCCCAaCCa -3'
miRNA:   3'- cuUGCUGGa--GUUGGCGUa--CGGGU-GGc -5'
25638 3' -55.8 NC_005337.1 + 127167 0.69 0.745313
Target:  5'- ---aGACUUCGACUGCGUcGCugCCACCGc -3'
miRNA:   3'- cuugCUGGAGUUGGCGUA-CG--GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 55995 0.69 0.755041
Target:  5'- cGGGCGACCUCGcUgGCGggGCUCAUCGc -3'
miRNA:   3'- -CUUGCUGGAGUuGgCGUa-CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 3008 0.69 0.755041
Target:  5'- cGGACGGgCUcCGGCagCGCGUGCgCGCCGa -3'
miRNA:   3'- -CUUGCUgGA-GUUG--GCGUACGgGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 116582 0.75 0.436067
Target:  5'- --cUGACCUC-GCC-CAUGCCCGCCa -3'
miRNA:   3'- cuuGCUGGAGuUGGcGUACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 102475 0.75 0.400688
Target:  5'- ----uACCUCGACCGCGUGCUCAgCGu -3'
miRNA:   3'- cuugcUGGAGUUGGCGUACGGGUgGC- -5'
25638 3' -55.8 NC_005337.1 + 91714 0.78 0.285384
Target:  5'- -cGCGGCCUcCAGCCGCA-GCCgCACCa -3'
miRNA:   3'- cuUGCUGGA-GUUGGCGUaCGG-GUGGc -5'
25638 3' -55.8 NC_005337.1 + 1963 0.66 0.902864
Target:  5'- cAGCGcccCCUCcGCCGcCGUGCaCGCCGg -3'
miRNA:   3'- cUUGCu--GGAGuUGGC-GUACGgGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.