miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 64311 0.71 0.654352
Target:  5'- --cCGGCgUCuugCGCGUGCCCACCa -3'
miRNA:   3'- cuuGCUGgAGuugGCGUACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 39224 0.72 0.602755
Target:  5'- cGGGCGugCgcgaCAACgCGCAggcguuccUGCCCGCCGu -3'
miRNA:   3'- -CUUGCugGa---GUUG-GCGU--------ACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 120143 0.73 0.502031
Target:  5'- cGAGCucgcgGACUUCGuCCGCGUGgCCACCGc -3'
miRNA:   3'- -CUUG-----CUGGAGUuGGCGUACgGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 116582 0.75 0.436067
Target:  5'- --cUGACCUC-GCC-CAUGCCCGCCa -3'
miRNA:   3'- cuuGCUGGAGuUGGcGUACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 103196 0.68 0.775098
Target:  5'- cGACGACaugcuccgugucggCAACUGCAUgGCCCGCUGc -3'
miRNA:   3'- cUUGCUGga------------GUUGGCGUA-CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 38157 0.69 0.725565
Target:  5'- -cGCGGCauccugcgCGGCCGCAUGUCCuCCGc -3'
miRNA:   3'- cuUGCUGga------GUUGGCGUACGGGuGGC- -5'
25638 3' -55.8 NC_005337.1 + 84966 0.72 0.582217
Target:  5'- uGGAUGGCCUCcagguAUCGCcgGUCCGCCc -3'
miRNA:   3'- -CUUGCUGGAGu----UGGCGuaCGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 102475 0.75 0.400688
Target:  5'- ----uACCUCGACCGCGUGCUCAgCGu -3'
miRNA:   3'- cuugcUGGAGUUGGCGUACGGGUgGC- -5'
25638 3' -55.8 NC_005337.1 + 63475 0.7 0.715562
Target:  5'- cGAUGACgCUCAccagccGCCGCAUGgCCuCCGa -3'
miRNA:   3'- cUUGCUG-GAGU------UGGCGUACgGGuGGC- -5'
25638 3' -55.8 NC_005337.1 + 91714 0.78 0.285384
Target:  5'- -cGCGGCCUcCAGCCGCA-GCCgCACCa -3'
miRNA:   3'- cuUGCUGGA-GUUGGCGUaCGG-GUGGc -5'
25638 3' -55.8 NC_005337.1 + 93746 0.72 0.602755
Target:  5'- -cGCGcGCCgcggCGGCUGCAUGCCgCACCu -3'
miRNA:   3'- cuUGC-UGGa---GUUGGCGUACGG-GUGGc -5'
25638 3' -55.8 NC_005337.1 + 1760 0.7 0.69535
Target:  5'- aGGAcCGACCagGGCgGCAU-CCCGCCGg -3'
miRNA:   3'- -CUU-GCUGGagUUGgCGUAcGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 759 0.72 0.561825
Target:  5'- -cGCGGCCUCGACgGCGgccaugugcUGCgCGCCGc -3'
miRNA:   3'- cuUGCUGGAGUUGgCGU---------ACGgGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 96574 0.73 0.541631
Target:  5'- uGGACGACCUCAcGCgCGCGggcGUCCACaCGg -3'
miRNA:   3'- -CUUGCUGGAGU-UG-GCGUa--CGGGUG-GC- -5'
25638 3' -55.8 NC_005337.1 + 72108 0.74 0.482708
Target:  5'- -uACGACCUCGAcggcguCCGCAUcCCCAUCGu -3'
miRNA:   3'- cuUGCUGGAGUU------GGCGUAcGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 73451 0.74 0.454419
Target:  5'- -cGCGugCUCAuCCGCGUGCacgaCACCa -3'
miRNA:   3'- cuUGCugGAGUuGGCGUACGg---GUGGc -5'
25638 3' -55.8 NC_005337.1 + 44922 0.68 0.783523
Target:  5'- cAACGGCgccaUCGACCuCAUGCgCCACCu -3'
miRNA:   3'- cUUGCUGg---AGUUGGcGUACG-GGUGGc -5'
25638 3' -55.8 NC_005337.1 + 52308 0.68 0.777919
Target:  5'- -cAUGACgCUCAACgGCAucauguaccggcucaUGUCCGCCGu -3'
miRNA:   3'- cuUGCUG-GAGUUGgCGU---------------ACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 132965 0.68 0.770372
Target:  5'- ---gGACCUCcugcGCCGCcggauggacaaccUGCCCGCCGa -3'
miRNA:   3'- cuugCUGGAGu---UGGCGu------------ACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 90048 0.69 0.735485
Target:  5'- cGACGGCCUCGG-CGCucGCCCGCUc -3'
miRNA:   3'- cUUGCUGGAGUUgGCGuaCGGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.