miRNA display CGI


Results 81 - 100 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 7874 0.68 0.819522
Target:  5'- cGGGCGGCCUUGGCCGUga--UCACCGu -3'
miRNA:   3'- -CUUGCUGGAGUUGGCGuacgGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 132157 0.68 0.819522
Target:  5'- aGAACG-CCgcuGCaCGCGUGCCUgACCGg -3'
miRNA:   3'- -CUUGCuGGaguUG-GCGUACGGG-UGGC- -5'
25638 3' -55.8 NC_005337.1 + 101942 0.67 0.836515
Target:  5'- uGGACGAgCUgCGcCCGCAcgugGCCUGCCGc -3'
miRNA:   3'- -CUUGCUgGA-GUuGGCGUa---CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 133269 0.67 0.844731
Target:  5'- cGACGGCCUcCAGgCGac-GCCCGCCc -3'
miRNA:   3'- cUUGCUGGA-GUUgGCguaCGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 66299 0.67 0.852751
Target:  5'- --cCGAcCCUgGACCGCGUGagCGCCGc -3'
miRNA:   3'- cuuGCU-GGAgUUGGCGUACggGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 133230 0.67 0.852751
Target:  5'- --cCGGCCUC--CCGCc-GCCCGCCu -3'
miRNA:   3'- cuuGCUGGAGuuGGCGuaCGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 56968 0.67 0.868174
Target:  5'- ---gGACCcCGACUGCGUGCaggCCAUCGu -3'
miRNA:   3'- cuugCUGGaGUUGGCGUACG---GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 9472 0.67 0.868174
Target:  5'- cGGCG-CgUCcACCGCcgGCCCAUCu -3'
miRNA:   3'- cUUGCuGgAGuUGGCGuaCGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 56592 0.68 0.774156
Target:  5'- aGAGCGAguuCgUCGACCGCuuccugGCCUucGCCGg -3'
miRNA:   3'- -CUUGCU---GgAGUUGGCGua----CGGG--UGGC- -5'
25638 3' -55.8 NC_005337.1 + 57540 0.66 0.896387
Target:  5'- ---gGGCCUgGACCGCAUGCacgggCUGCUGc -3'
miRNA:   3'- cuugCUGGAgUUGGCGUACG-----GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 34968 0.66 0.896387
Target:  5'- cGACGACC-CGgcGCUGCGgaacGCCgCGCCGc -3'
miRNA:   3'- cUUGCUGGaGU--UGGCGUa---CGG-GUGGC- -5'
25638 3' -55.8 NC_005337.1 + 12624 0.66 0.902864
Target:  5'- -cACGACCUCGggggucGCCGCGUcGUCgauGCCGu -3'
miRNA:   3'- cuUGCUGGAGU------UGGCGUA-CGGg--UGGC- -5'
25638 3' -55.8 NC_005337.1 + 1963 0.66 0.902864
Target:  5'- cAGCGcccCCUCcGCCGcCGUGCaCGCCGg -3'
miRNA:   3'- cUUGCu--GGAGuUGGC-GUACGgGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 120143 0.73 0.502031
Target:  5'- cGAGCucgcgGACUUCGuCCGCGUGgCCACCGc -3'
miRNA:   3'- -CUUG-----CUGGAGUuGGCGUACgGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 133418 0.72 0.5517
Target:  5'- --cCGGCCgCGcCCGCGcUGCCCGCCGc -3'
miRNA:   3'- cuuGCUGGaGUuGGCGU-ACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 84966 0.72 0.582217
Target:  5'- uGGAUGGCCUCcagguAUCGCcgGUCCGCCc -3'
miRNA:   3'- -CUUGCUGGAGu----UGGCGuaCGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 59159 0.72 0.602755
Target:  5'- --uCGACCUCcGCCGCGcUGgUCACCGu -3'
miRNA:   3'- cuuGCUGGAGuUGGCGU-ACgGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 98155 0.7 0.714558
Target:  5'- uGGCGGCCUuccccgaCGACCGCGUGaccuCCAUCGu -3'
miRNA:   3'- cUUGCUGGA-------GUUGGCGUACg---GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 90048 0.69 0.735485
Target:  5'- cGACGGCCUCGG-CGCucGCCCGCUc -3'
miRNA:   3'- cUUGCUGGAGUUgGCGuaCGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 66665 0.67 0.836515
Target:  5'- uGAugGACgUCuucgacgagAACCGCAUGgCCGCgGu -3'
miRNA:   3'- -CUugCUGgAG---------UUGGCGUACgGGUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.