Results 21 - 40 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25638 | 3' | -55.8 | NC_005337.1 | + | 100911 | 0.66 | 0.896387 |
Target: 5'- cGACGACUaCAugUGCAccaccgUGCgCACCGa -3' miRNA: 3'- cUUGCUGGaGUugGCGU------ACGgGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 57540 | 0.66 | 0.896387 |
Target: 5'- ---gGGCCUgGACCGCAUGCacgggCUGCUGc -3' miRNA: 3'- cuugCUGGAgUUGGCGUACG-----GGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 65923 | 0.66 | 0.896387 |
Target: 5'- -cGCGAUCgCGACCGCGccGUCCuCCGg -3' miRNA: 3'- cuUGCUGGaGUUGGCGUa-CGGGuGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 58018 | 0.66 | 0.89373 |
Target: 5'- cGGGCGugCUCGGCCaggccgcGCucuucgacggcggcGUGCUCGCCa -3' miRNA: 3'- -CUUGCugGAGUUGG-------CG--------------UACGGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 24398 | 0.66 | 0.889676 |
Target: 5'- cGGACGugCUCGACCGgAagGCCgggcugugcgugCACCu -3' miRNA: 3'- -CUUGCugGAGUUGGCgUa-CGG------------GUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 42232 | 0.66 | 0.889676 |
Target: 5'- -uACGACCUCAcCCGgAccuacGUCCACCc -3' miRNA: 3'- cuUGCUGGAGUuGGCgUa----CGGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 57424 | 0.66 | 0.889676 |
Target: 5'- cGGACGcCCgucCAucuACCGCGUGCgcgugcgcauCCACCGc -3' miRNA: 3'- -CUUGCuGGa--GU---UGGCGUACG----------GGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 86431 | 0.66 | 0.889676 |
Target: 5'- uGGCGuCCUCggUCGCGU-CCUugCGg -3' miRNA: 3'- cUUGCuGGAGuuGGCGUAcGGGugGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 95099 | 0.66 | 0.882733 |
Target: 5'- cGACGGCCUU-GCCGCAgucggcgaucaUGUCCGCgCGc -3' miRNA: 3'- cUUGCUGGAGuUGGCGU-----------ACGGGUG-GC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 51733 | 0.66 | 0.882733 |
Target: 5'- cGAGCuGCCU-GGCgGCAggcUGCCCGCCc -3' miRNA: 3'- -CUUGcUGGAgUUGgCGU---ACGGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 46041 | 0.66 | 0.882733 |
Target: 5'- -cACGACgUCu-UCGCAgcaGCCCGCCu -3' miRNA: 3'- cuUGCUGgAGuuGGCGUa--CGGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 69060 | 0.66 | 0.875564 |
Target: 5'- -uACGACCUgGACgCG-GUGCCCGgCGu -3' miRNA: 3'- cuUGCUGGAgUUG-GCgUACGGGUgGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 114114 | 0.66 | 0.875564 |
Target: 5'- --gUGGCCUCcGCCGCG-GCCUGCgGc -3' miRNA: 3'- cuuGCUGGAGuUGGCGUaCGGGUGgC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 6691 | 0.66 | 0.875564 |
Target: 5'- cGGCGACgUCcACgGCugcGCCCGCCu -3' miRNA: 3'- cUUGCUGgAGuUGgCGua-CGGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 82636 | 0.66 | 0.875564 |
Target: 5'- uGGCGACCgcggagcgcCGACCGCA-GCUCgucGCCGa -3' miRNA: 3'- cUUGCUGGa--------GUUGGCGUaCGGG---UGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 90373 | 0.66 | 0.875564 |
Target: 5'- -cGCGGCCUCuucccGGCCGCgcGUGCacauCACCa -3' miRNA: 3'- cuUGCUGGAG-----UUGGCG--UACGg---GUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 68299 | 0.66 | 0.875564 |
Target: 5'- cGGCGGCgUgGACgCGCGUGCCCGa-- -3' miRNA: 3'- cUUGCUGgAgUUG-GCGUACGGGUggc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 90297 | 0.66 | 0.875564 |
Target: 5'- --uCGGCCUCcucGCCGCcggGCgCGCCGc -3' miRNA: 3'- cuuGCUGGAGu--UGGCGua-CGgGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 98021 | 0.66 | 0.874835 |
Target: 5'- -cGCGuaccaguguGCCUCGaagacggagacggACCGCAUGCUgGCCa -3' miRNA: 3'- cuUGC---------UGGAGU-------------UGGCGUACGGgUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 131123 | 0.66 | 0.872635 |
Target: 5'- cAACGACCacaucacuugcaUCGACCGCGcgcuggacgcgagGCCgGCCGc -3' miRNA: 3'- cUUGCUGG------------AGUUGGCGUa------------CGGgUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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