miRNA display CGI


Results 41 - 60 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 38153 0.66 0.979283
Target:  5'- cGGCcGcgGCAuccUGCGCGGCCgCAUGuCCu -3'
miRNA:   3'- -CCGaCa-UGU---GCGUGCUGGaGUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 52703 0.66 0.979283
Target:  5'- uGgUGUACGCGCaggaguACGACCcguaCAUGuCCu -3'
miRNA:   3'- cCgACAUGUGCG------UGCUGGa---GUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 125062 0.66 0.976903
Target:  5'- cGGCacggGUACGacCGguucugggucCGCGACCgCGUGGCCa -3'
miRNA:   3'- -CCGa---CAUGU--GC----------GUGCUGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 77424 0.66 0.974327
Target:  5'- uGGCgGUGCauGCGCACGAagcCGUG-CCg -3'
miRNA:   3'- -CCGaCAUG--UGCGUGCUggaGUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 46175 0.66 0.974327
Target:  5'- cGCUGUACgACGagauCGACCagUCGUcGCCg -3'
miRNA:   3'- cCGACAUG-UGCgu--GCUGG--AGUAcUGG- -5'
25638 5' -52.4 NC_005337.1 + 94272 0.66 0.974327
Target:  5'- -----cGCGCGgAUGGCCUCcGUGGCCu -3'
miRNA:   3'- ccgacaUGUGCgUGCUGGAG-UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 30964 0.66 0.981266
Target:  5'- cGGCgccgaaGUugAUGCGC-ACCUCGUucaugcggucgcgGACCa -3'
miRNA:   3'- -CCGa-----CAugUGCGUGcUGGAGUA-------------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 2924 0.66 0.981266
Target:  5'- cGGC-GUcgccggagugccgACGCGCACGGCgCgCAUGAgCg -3'
miRNA:   3'- -CCGaCA-------------UGUGCGUGCUG-GaGUACUgG- -5'
25638 5' -52.4 NC_005337.1 + 95696 0.66 0.980838
Target:  5'- cGCUGUcggggauguaguccGCGCGCagcaGCGACC-CcgGACg -3'
miRNA:   3'- cCGACA--------------UGUGCG----UGCUGGaGuaCUGg -5'
25638 5' -52.4 NC_005337.1 + 96957 0.66 0.979283
Target:  5'- uGCUcgcCGCGCGCGACCagcuccUCGcGGCCg -3'
miRNA:   3'- cCGAcauGUGCGUGCUGG------AGUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 124849 0.66 0.974059
Target:  5'- cGGCUcGUACAcguccucguggauCGCaugccgccuACGGCCUCcgagGACCu -3'
miRNA:   3'- -CCGA-CAUGU-------------GCG---------UGCUGGAGua--CUGG- -5'
25638 5' -52.4 NC_005337.1 + 112861 0.66 0.971549
Target:  5'- gGGCcaa--GCGCGCG-CUUCAUGACg -3'
miRNA:   3'- -CCGacaugUGCGUGCuGGAGUACUGg -5'
25638 5' -52.4 NC_005337.1 + 100224 0.66 0.971549
Target:  5'- cGGCgccgcGUGCGCGUgaucGCGgucccGCCcgcCAUGACCg -3'
miRNA:   3'- -CCGa----CAUGUGCG----UGC-----UGGa--GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 122440 0.66 0.971549
Target:  5'- cGGCacaUGCACGC-CGACUUCAUcGCg -3'
miRNA:   3'- -CCGac-AUGUGCGuGCUGGAGUAcUGg -5'
25638 5' -52.4 NC_005337.1 + 33042 0.66 0.974327
Target:  5'- cGCga-GCACGCGCGcggacGCCUCcgcGACCu -3'
miRNA:   3'- cCGacaUGUGCGUGC-----UGGAGua-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 47255 0.66 0.974327
Target:  5'- ---cGUGCAguCGCugGACgCggaCAUGACCa -3'
miRNA:   3'- ccgaCAUGU--GCGugCUG-Ga--GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 984 0.66 0.976903
Target:  5'- gGGCUGgcgcgGCGCGCggagggcggGCGucGCCUgGaGGCCg -3'
miRNA:   3'- -CCGACa----UGUGCG---------UGC--UGGAgUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 66288 0.66 0.976903
Target:  5'- uGGCgc-ACGCGC-CGACCcug-GACCg -3'
miRNA:   3'- -CCGacaUGUGCGuGCUGGaguaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 56016 0.66 0.974327
Target:  5'- aGCUcucGCGCGUgaACGACCUCA--ACCg -3'
miRNA:   3'- cCGAca-UGUGCG--UGCUGGAGUacUGG- -5'
25638 5' -52.4 NC_005337.1 + 66138 0.66 0.971549
Target:  5'- cGCUagggGCGCGCGCGGCCacc-GGCCc -3'
miRNA:   3'- cCGAca--UGUGCGUGCUGGaguaCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.