miRNA display CGI


Results 61 - 80 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 46026 0.66 0.981477
Target:  5'- cGGCgcgccgGCACGCACGACgUCuucGCa -3'
miRNA:   3'- -CCGaca---UGUGCGUGCUGgAGuacUGg -5'
25638 5' -52.4 NC_005337.1 + 50755 0.66 0.981477
Target:  5'- -uUUGUaacGCGCGCAuCGACCUCGcGcCCu -3'
miRNA:   3'- ccGACA---UGUGCGU-GCUGGAGUaCuGG- -5'
25638 5' -52.4 NC_005337.1 + 75438 0.66 0.981477
Target:  5'- uGGCUGUugAgcCGCACGGCgCgCccGACg -3'
miRNA:   3'- -CCGACAugU--GCGUGCUG-GaGuaCUGg -5'
25638 5' -52.4 NC_005337.1 + 125986 0.66 0.981477
Target:  5'- cGGCUGcagaccccgcUGCACGuCGCGGCCgCGUucaACCc -3'
miRNA:   3'- -CCGAC----------AUGUGC-GUGCUGGaGUAc--UGG- -5'
25638 5' -52.4 NC_005337.1 + 1184 0.66 0.981477
Target:  5'- aGGCgGUGCGCgaGCGCGGCaCgggcgcgCAUuucGACCa -3'
miRNA:   3'- -CCGaCAUGUG--CGUGCUG-Ga------GUA---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 46223 0.67 0.961572
Target:  5'- aGCaGUACAUccaGCACGACCcCGUGcacgugcGCCg -3'
miRNA:   3'- cCGaCAUGUG---CGUGCUGGaGUAC-------UGG- -5'
25638 5' -52.4 NC_005337.1 + 9487 0.67 0.96856
Target:  5'- cGGCccaucUGCGCGCA-GAgCUCgAUGGCCg -3'
miRNA:   3'- -CCGac---AUGUGCGUgCUgGAG-UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 110953 0.67 0.965355
Target:  5'- gGGC-GUGCGCagcuGCGCGGCCgCGUcGACg -3'
miRNA:   3'- -CCGaCAUGUG----CGUGCUGGaGUA-CUGg -5'
25638 5' -52.4 NC_005337.1 + 12235 0.67 0.968869
Target:  5'- aGGCUGUGCAgcggcguguucucgaGCAUGuCCgUCGcGGCCg -3'
miRNA:   3'- -CCGACAUGUg--------------CGUGCuGG-AGUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 8753 0.67 0.961928
Target:  5'- cGGCgccGUAC-CGCACGagcaGCCgCAcGACCu -3'
miRNA:   3'- -CCGa--CAUGuGCGUGC----UGGaGUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 116334 0.67 0.96856
Target:  5'- uGCUGcUGCGgGCGCagcGCCgggcCAUGACCc -3'
miRNA:   3'- cCGAC-AUGUgCGUGc--UGGa---GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 92419 0.67 0.965023
Target:  5'- gGGCUcGcGCACcugcucgaGCACGugCUCAUcuccuucGACCa -3'
miRNA:   3'- -CCGA-CaUGUG--------CGUGCugGAGUA-------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 117248 0.67 0.961928
Target:  5'- uGCcGUGCGCcuucGCGCGGCCcgCA-GACCc -3'
miRNA:   3'- cCGaCAUGUG----CGUGCUGGa-GUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 57283 0.67 0.961928
Target:  5'- gGGCcg-GCGCGCGCGGCUgCGgcGCCg -3'
miRNA:   3'- -CCGacaUGUGCGUGCUGGaGUacUGG- -5'
25638 5' -52.4 NC_005337.1 + 105159 0.67 0.961928
Target:  5'- uGCUGcugGCGCuGCACGGCgUgGUcGACCc -3'
miRNA:   3'- cCGACa--UGUG-CGUGCUGgAgUA-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 44706 0.67 0.954381
Target:  5'- cGGUggUGUGCucgACGUGCGGCCgg--GACCu -3'
miRNA:   3'- -CCG--ACAUG---UGCGUGCUGGaguaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 7861 0.67 0.96856
Target:  5'- cGCcGUcGCGCGCcggGCGGCCU--UGGCCg -3'
miRNA:   3'- cCGaCA-UGUGCG---UGCUGGAguACUGG- -5'
25638 5' -52.4 NC_005337.1 + 36981 0.67 0.961928
Target:  5'- aGGUUGUACGUGUGCGACUcgUCGaGcACCa -3'
miRNA:   3'- -CCGACAUGUGCGUGCUGG--AGUaC-UGG- -5'
25638 5' -52.4 NC_005337.1 + 32748 0.67 0.961928
Target:  5'- cGGCgGU-CACGUccACGGCCUCca-GCCg -3'
miRNA:   3'- -CCGaCAuGUGCG--UGCUGGAGuacUGG- -5'
25638 5' -52.4 NC_005337.1 + 75136 0.67 0.96856
Target:  5'- gGGCUGUAC-CGCACGggcagguagaACUUCccGAaguCCa -3'
miRNA:   3'- -CCGACAUGuGCGUGC----------UGGAGuaCU---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.