miRNA display CGI


Results 81 - 100 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 36981 0.67 0.961928
Target:  5'- aGGUUGUACGUGUGCGACUcgUCGaGcACCa -3'
miRNA:   3'- -CCGACAUGUGCGUGCUGG--AGUaC-UGG- -5'
25638 5' -52.4 NC_005337.1 + 116334 0.67 0.96856
Target:  5'- uGCUGcUGCGgGCGCagcGCCgggcCAUGACCc -3'
miRNA:   3'- cCGAC-AUGUgCGUGc--UGGa---GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 12235 0.67 0.968869
Target:  5'- aGGCUGUGCAgcggcguguucucgaGCAUGuCCgUCGcGGCCg -3'
miRNA:   3'- -CCGACAUGUg--------------CGUGCuGG-AGUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 92419 0.67 0.965023
Target:  5'- gGGCUcGcGCACcugcucgaGCACGugCUCAUcuccuucGACCa -3'
miRNA:   3'- -CCGA-CaUGUG--------CGUGCugGAGUA-------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 117248 0.67 0.961928
Target:  5'- uGCcGUGCGCcuucGCGCGGCCcgCA-GACCc -3'
miRNA:   3'- cCGaCAUGUG----CGUGCUGGa-GUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 105159 0.67 0.961928
Target:  5'- uGCUGcugGCGCuGCACGGCgUgGUcGACCc -3'
miRNA:   3'- cCGACa--UGUG-CGUGCUGgAgUA-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 32748 0.67 0.961928
Target:  5'- cGGCgGU-CACGUccACGGCCUCca-GCCg -3'
miRNA:   3'- -CCGaCAuGUGCG--UGCUGGAGuacUGG- -5'
25638 5' -52.4 NC_005337.1 + 64671 0.67 0.958271
Target:  5'- cGGCgaagAUGCGCACGACCgagCAgu-CCu -3'
miRNA:   3'- -CCGaca-UGUGCGUGCUGGa--GUacuGG- -5'
25638 5' -52.4 NC_005337.1 + 10407 0.67 0.958271
Target:  5'- aGGCcGUACGCGcCGCGcccGCCgucCAUGcacGCCg -3'
miRNA:   3'- -CCGaCAUGUGC-GUGC---UGGa--GUAC---UGG- -5'
25638 5' -52.4 NC_005337.1 + 67643 0.67 0.958271
Target:  5'- aGCUGguCGCGCGCGugCUCcagcACCa -3'
miRNA:   3'- cCGACauGUGCGUGCugGAGuac-UGG- -5'
25638 5' -52.4 NC_005337.1 + 27123 0.67 0.961928
Target:  5'- cGCuUGgcCACGCGCagcagcguGACCUCcgGACa -3'
miRNA:   3'- cCG-ACauGUGCGUG--------CUGGAGuaCUGg -5'
25638 5' -52.4 NC_005337.1 + 49914 0.67 0.961928
Target:  5'- uGGCUcgGUACAgGCGCGAgCgcggggacagCAcGACCa -3'
miRNA:   3'- -CCGA--CAUGUgCGUGCUgGa---------GUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 114963 0.67 0.961928
Target:  5'- --gUGUGCACGCGCuccGCCUaCGUGGgCg -3'
miRNA:   3'- ccgACAUGUGCGUGc--UGGA-GUACUgG- -5'
25638 5' -52.4 NC_005337.1 + 10225 0.67 0.961572
Target:  5'- aGCcGUACACGguCAUGugCUCcuugcagGUGGCCa -3'
miRNA:   3'- cCGaCAUGUGC--GUGCugGAG-------UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 24728 0.67 0.959762
Target:  5'- cGCUGUGCAUGCugaaGAuCCUCGcgcugcagcacgagGACCu -3'
miRNA:   3'- cCGACAUGUGCGug--CU-GGAGUa-------------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 75136 0.67 0.96856
Target:  5'- gGGCUGUAC-CGCACGggcagguagaACUUCccGAaguCCa -3'
miRNA:   3'- -CCGACAUGuGCGUGC----------UGGAGuaCU---GG- -5'
25638 5' -52.4 NC_005337.1 + 46223 0.67 0.961572
Target:  5'- aGCaGUACAUccaGCACGACCcCGUGcacgugcGCCg -3'
miRNA:   3'- cCGaCAUGUG---CGUGCUGGaGUAC-------UGG- -5'
25638 5' -52.4 NC_005337.1 + 66331 0.67 0.953979
Target:  5'- gGGCUG---GCGaCACGugCUCGUggagcgcGACCa -3'
miRNA:   3'- -CCGACaugUGC-GUGCugGAGUA-------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 44706 0.67 0.954381
Target:  5'- cGGUggUGUGCucgACGUGCGGCCgg--GACCu -3'
miRNA:   3'- -CCG--ACAUG---UGCGUGCUGGaguaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 110953 0.67 0.965355
Target:  5'- gGGC-GUGCGCagcuGCGCGGCCgCGUcGACg -3'
miRNA:   3'- -CCGaCAUGUG----CGUGCUGGaGUA-CUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.