miRNA display CGI


Results 101 - 120 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 74745 0.67 0.96856
Target:  5'- uGUUcGUGCACGCcuucaucgACGACCUgGUcACCg -3'
miRNA:   3'- cCGA-CAUGUGCG--------UGCUGGAgUAcUGG- -5'
25638 5' -52.4 NC_005337.1 + 26967 0.67 0.96856
Target:  5'- cGCUcGUACACGCagaaguucACGGUCUCG-GACCc -3'
miRNA:   3'- cCGA-CAUGUGCG--------UGCUGGAGUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 128643 0.67 0.96856
Target:  5'- uGCUGgAUAuccUGCGCGGCCggUCGUGcACCg -3'
miRNA:   3'- cCGACaUGU---GCGUGCUGG--AGUAC-UGG- -5'
25638 5' -52.4 NC_005337.1 + 80767 0.67 0.96856
Target:  5'- gGGCgcagGuUGCugGuCACG-CC-CGUGACCu -3'
miRNA:   3'- -CCGa---C-AUGugC-GUGCuGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 57283 0.67 0.961928
Target:  5'- gGGCcg-GCGCGCGCGGCUgCGgcGCCg -3'
miRNA:   3'- -CCGacaUGUGCGUGCUGGaGUacUGG- -5'
25638 5' -52.4 NC_005337.1 + 64822 0.67 0.96856
Target:  5'- cGGUaccugcccaUGUGCGCGCGCGAgCUggcgCcgGACg -3'
miRNA:   3'- -CCG---------ACAUGUGCGUGCUgGA----GuaCUGg -5'
25638 5' -52.4 NC_005337.1 + 68133 0.67 0.963326
Target:  5'- gGGCcgGUggccGCGCGCGCcccuagcgggcggcgGAUCuUCGUGGCCg -3'
miRNA:   3'- -CCGa-CA----UGUGCGUG---------------CUGG-AGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 114963 0.67 0.961928
Target:  5'- --gUGUGCACGCGCuccGCCUaCGUGGgCg -3'
miRNA:   3'- ccgACAUGUGCGUGc--UGGA-GUACUgG- -5'
25638 5' -52.4 NC_005337.1 + 49914 0.67 0.961928
Target:  5'- uGGCUcgGUACAgGCGCGAgCgcggggacagCAcGACCa -3'
miRNA:   3'- -CCGA--CAUGUgCGUGCUgGa---------GUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 27123 0.67 0.961928
Target:  5'- cGCuUGgcCACGCGCagcagcguGACCUCcgGACa -3'
miRNA:   3'- cCG-ACauGUGCGUG--------CUGGAGuaCUGg -5'
25638 5' -52.4 NC_005337.1 + 73349 0.68 0.945884
Target:  5'- cGGCaGUgGCGCGuCGCGugCccgacCGUGGCCg -3'
miRNA:   3'- -CCGaCA-UGUGC-GUGCugGa----GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 103891 0.68 0.945884
Target:  5'- uGCUGgcCGCGCGCGACauggaCGUGcuCCg -3'
miRNA:   3'- cCGACauGUGCGUGCUGga---GUACu-GG- -5'
25638 5' -52.4 NC_005337.1 + 111182 0.68 0.945884
Target:  5'- uGCUGaccaccGCGCGCACGauGCCgggCAcGGCCg -3'
miRNA:   3'- cCGACa-----UGUGCGUGC--UGGa--GUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 125745 0.68 0.950253
Target:  5'- aGGCgGaGCGCGCGUGACCgagaagGACCu -3'
miRNA:   3'- -CCGaCaUGUGCGUGCUGGagua--CUGG- -5'
25638 5' -52.4 NC_005337.1 + 96337 0.68 0.945884
Target:  5'- cGCUGgcgGCGCuGCugGACUUCGcgaagcgggggcUGAUCg -3'
miRNA:   3'- cCGACa--UGUG-CGugCUGGAGU------------ACUGG- -5'
25638 5' -52.4 NC_005337.1 + 32114 0.68 0.945884
Target:  5'- uGGCg--GCGCGCAUGuCCagCGUGuCCa -3'
miRNA:   3'- -CCGacaUGUGCGUGCuGGa-GUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 41948 0.68 0.945884
Target:  5'- cGGCUGgACgguGCGCGCGAgCagcuugUCGuUGACCg -3'
miRNA:   3'- -CCGACaUG---UGCGUGCUgG------AGU-ACUGG- -5'
25638 5' -52.4 NC_005337.1 + 7469 0.68 0.950253
Target:  5'- uGGCgacgaggGCGCGCACGACgUCcagGuCCa -3'
miRNA:   3'- -CCGaca----UGUGCGUGCUGgAGua-CuGG- -5'
25638 5' -52.4 NC_005337.1 + 73556 0.68 0.945884
Target:  5'- cGGUcGUcgACGgGCACuuCUUCGUGACCa -3'
miRNA:   3'- -CCGaCA--UGUgCGUGcuGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 97974 0.68 0.945884
Target:  5'- ---cGUGCGCGCcauccGCGACaC-CGUGGCCg -3'
miRNA:   3'- ccgaCAUGUGCG-----UGCUG-GaGUACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.