miRNA display CGI


Results 121 - 140 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 111182 0.68 0.945884
Target:  5'- uGCUGaccaccGCGCGCACGauGCCgggCAcGGCCg -3'
miRNA:   3'- cCGACa-----UGUGCGUGC--UGGa--GUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 103891 0.68 0.945884
Target:  5'- uGCUGgcCGCGCGCGACauggaCGUGcuCCg -3'
miRNA:   3'- cCGACauGUGCGUGCUGga---GUACu-GG- -5'
25638 5' -52.4 NC_005337.1 + 8362 0.68 0.950253
Target:  5'- uGCgagGCGCgGCACGAgCUCccaAUGGCCa -3'
miRNA:   3'- cCGacaUGUG-CGUGCUgGAG---UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 44918 0.68 0.941269
Target:  5'- uGGCcaacgGCGC-CAuCGACCUCAUGcGCCa -3'
miRNA:   3'- -CCGaca--UGUGcGU-GCUGGAGUAC-UGG- -5'
25638 5' -52.4 NC_005337.1 + 125745 0.68 0.950253
Target:  5'- aGGCgGaGCGCGCGUGACCgagaagGACCu -3'
miRNA:   3'- -CCGaCaUGUGCGUGCUGGagua--CUGG- -5'
25638 5' -52.4 NC_005337.1 + 7469 0.68 0.950253
Target:  5'- uGGCgacgaggGCGCGCACGACgUCcagGuCCa -3'
miRNA:   3'- -CCGaca----UGUGCGUGCUGgAGua-CuGG- -5'
25638 5' -52.4 NC_005337.1 + 97974 0.68 0.945884
Target:  5'- ---cGUGCGCGCcauccGCGACaC-CGUGGCCg -3'
miRNA:   3'- ccgaCAUGUGCG-----UGCUG-GaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 28256 0.68 0.945884
Target:  5'- cGGCaccACGCGCACGugCguggugucCGUGAUCa -3'
miRNA:   3'- -CCGacaUGUGCGUGCugGa-------GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 32114 0.68 0.945884
Target:  5'- uGGCg--GCGCGCAUGuCCagCGUGuCCa -3'
miRNA:   3'- -CCGacaUGUGCGUGCuGGa-GUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 22523 0.68 0.941269
Target:  5'- cGGCUGUAC-CGCGagaACUUCGUGgACg -3'
miRNA:   3'- -CCGACAUGuGCGUgc-UGGAGUAC-UGg -5'
25638 5' -52.4 NC_005337.1 + 47525 0.68 0.936406
Target:  5'- uGGCcaucGUGCcggaGCGgGACCUCGUGgGCCu -3'
miRNA:   3'- -CCGa---CAUGug--CGUgCUGGAGUAC-UGG- -5'
25638 5' -52.4 NC_005337.1 + 79034 0.68 0.936406
Target:  5'- uGUUGUACACgacggaguucuuGCGCGugCUgAaGACCa -3'
miRNA:   3'- cCGACAUGUG------------CGUGCugGAgUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 60899 0.68 0.936406
Target:  5'- gGGCgugUGUGCGgGCACGGCCacggUcgGGCa -3'
miRNA:   3'- -CCG---ACAUGUgCGUGCUGGa---GuaCUGg -5'
25638 5' -52.4 NC_005337.1 + 6418 0.68 0.931295
Target:  5'- -aCUGUGCACGCacagcagcGCGGCCUCcgaGuCCg -3'
miRNA:   3'- ccGACAUGUGCG--------UGCUGGAGua-CuGG- -5'
25638 5' -52.4 NC_005337.1 + 3996 0.68 0.931295
Target:  5'- cGCuUGgacgAUGCGCACGuCCUUggGGCCa -3'
miRNA:   3'- cCG-ACa---UGUGCGUGCuGGAGuaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 46458 0.68 0.950253
Target:  5'- cGCgg-ACGCGUGCGACUUCcuggugguguggGUGGCCc -3'
miRNA:   3'- cCGacaUGUGCGUGCUGGAG------------UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 73556 0.68 0.945884
Target:  5'- cGGUcGUcgACGgGCACuuCUUCGUGACCa -3'
miRNA:   3'- -CCGaCA--UGUgCGUGcuGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 67323 0.68 0.930243
Target:  5'- uGGCgcgcucgaucGCGCGCGCGuCCgggucCGUGGCCa -3'
miRNA:   3'- -CCGaca-------UGUGCGUGCuGGa----GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 51061 0.68 0.931295
Target:  5'- cGGCaacGUGCucAUGCccguCGACCgCAUGACCu -3'
miRNA:   3'- -CCGa--CAUG--UGCGu---GCUGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 29215 0.68 0.936406
Target:  5'- cGCUGcGCAgcgcCGCGCGGCCgggCGUcGCCu -3'
miRNA:   3'- cCGACaUGU----GCGUGCUGGa--GUAcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.