miRNA display CGI


Results 141 - 160 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 56519 0.69 0.925934
Target:  5'- cGCgac-CGCGCcaagACGGCCUCGUGGCg -3'
miRNA:   3'- cCGacauGUGCG----UGCUGGAGUACUGg -5'
25638 5' -52.4 NC_005337.1 + 107091 0.69 0.908352
Target:  5'- cGCUGUGCGCGgA--GCCUCAaGACg -3'
miRNA:   3'- cCGACAUGUGCgUgcUGGAGUaCUGg -5'
25638 5' -52.4 NC_005337.1 + 72283 0.69 0.914462
Target:  5'- uGCUGUACAaGUACGugUUCcUGuCCa -3'
miRNA:   3'- cCGACAUGUgCGUGCugGAGuACuGG- -5'
25638 5' -52.4 NC_005337.1 + 27643 0.69 0.901996
Target:  5'- uGGCgGaGCGCGcCACGAUCUCGUcGAUa -3'
miRNA:   3'- -CCGaCaUGUGC-GUGCUGGAGUA-CUGg -5'
25638 5' -52.4 NC_005337.1 + 24048 0.69 0.920323
Target:  5'- aGCUGUGCucggGCGaCGCGGCCgc--GGCCg -3'
miRNA:   3'- cCGACAUG----UGC-GUGCUGGaguaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 24641 0.69 0.925934
Target:  5'- aGCUGguggACGCGCucGCGGCCUUccugGACa -3'
miRNA:   3'- cCGACa---UGUGCG--UGCUGGAGua--CUGg -5'
25638 5' -52.4 NC_005337.1 + 3630 0.69 0.920323
Target:  5'- gGGCaccUGUGCguccaGCGcCGCGGCCUCGUcGuCCg -3'
miRNA:   3'- -CCG---ACAUG-----UGC-GUGCUGGAGUA-CuGG- -5'
25638 5' -52.4 NC_005337.1 + 43837 0.69 0.928109
Target:  5'- uGGCcuc-CGCGCACGACCUCcUGcaguucauggucacgGCCa -3'
miRNA:   3'- -CCGacauGUGCGUGCUGGAGuAC---------------UGG- -5'
25638 5' -52.4 NC_005337.1 + 117467 0.69 0.914462
Target:  5'- cGCUGUACACGCACu-UCUCGaacacgGugCu -3'
miRNA:   3'- cCGACAUGUGCGUGcuGGAGUa-----CugG- -5'
25638 5' -52.4 NC_005337.1 + 95511 0.69 0.925934
Target:  5'- gGGCUccacCGCGCAcCGGCUcgcCAUGACCa -3'
miRNA:   3'- -CCGAcau-GUGCGU-GCUGGa--GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 91017 0.69 0.925934
Target:  5'- cGCUGaggaacaGCGCGUcaGCgGugCUCAUGGCCu -3'
miRNA:   3'- cCGACa------UGUGCG--UG-CugGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 86961 0.69 0.925934
Target:  5'- uGCUGUugACGaa-GACCUCGcgcgcgucgGACCu -3'
miRNA:   3'- cCGACAugUGCgugCUGGAGUa--------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 122225 0.69 0.925934
Target:  5'- cGGCgc-GCACGCcggACGACCgcacgCcgAUGACCg -3'
miRNA:   3'- -CCGacaUGUGCG---UGCUGGa----G--UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 101234 0.69 0.914462
Target:  5'- aGGC-GUcCGCGCGCGugCUCGcgcugGACg -3'
miRNA:   3'- -CCGaCAuGUGCGUGCugGAGUa----CUGg -5'
25638 5' -52.4 NC_005337.1 + 83379 0.7 0.895397
Target:  5'- cGCUGgGCGCGCGCGcccGCCgaaacCAUGuCCu -3'
miRNA:   3'- cCGACaUGUGCGUGC---UGGa----GUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 6231 0.7 0.866636
Target:  5'- gGGCguuggGCACguGCACGGCCU--UGGCCg -3'
miRNA:   3'- -CCGaca--UGUG--CGUGCUGGAguACUGG- -5'
25638 5' -52.4 NC_005337.1 + 4148 0.7 0.866636
Target:  5'- aGUUGUACA-GgGCGGCCUCAacGCCg -3'
miRNA:   3'- cCGACAUGUgCgUGCUGGAGUacUGG- -5'
25638 5' -52.4 NC_005337.1 + 22955 0.7 0.865871
Target:  5'- aGCUGgGCACGCugGGgCUCGUccucgagGACUa -3'
miRNA:   3'- cCGACaUGUGCGugCUgGAGUA-------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 74920 0.7 0.85888
Target:  5'- cGGCUGgcggccuucGCGCGCGCGGCCgcgCGgaugcgGugCu -3'
miRNA:   3'- -CCGACa--------UGUGCGUGCUGGa--GUa-----CugG- -5'
25638 5' -52.4 NC_005337.1 + 67330 0.7 0.85888
Target:  5'- aGGUcauggUGUACACGCccuccacgaugGCGcaGCC-CAUGACCg -3'
miRNA:   3'- -CCG-----ACAUGUGCG-----------UGC--UGGaGUACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.