miRNA display CGI


Results 61 - 80 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 67330 0.7 0.85888
Target:  5'- aGGUcauggUGUACACGCccuccacgaugGCGcaGCC-CAUGACCg -3'
miRNA:   3'- -CCG-----ACAUGUGCG-----------UGC--UGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 74363 0.7 0.874171
Target:  5'- cGGCUGggcaGCACGCGgGuCUUCcggGACCc -3'
miRNA:   3'- -CCGACa---UGUGCGUgCuGGAGua-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 2775 0.7 0.874171
Target:  5'- aGGCUGUcCACgaGCGCGgACCggugccgCAUGugCa -3'
miRNA:   3'- -CCGACAuGUG--CGUGC-UGGa------GUACugG- -5'
25638 5' -52.4 NC_005337.1 + 88052 0.7 0.888557
Target:  5'- cGCUGauCGCGUACGugCUCGUcGGCg -3'
miRNA:   3'- cCGACauGUGCGUGCugGAGUA-CUGg -5'
25638 5' -52.4 NC_005337.1 + 128170 0.7 0.895397
Target:  5'- uGCUGUGuccgUGCGCACuGCCgccggagaUCGUGACCu -3'
miRNA:   3'- cCGACAU----GUGCGUGcUGG--------AGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 58436 0.7 0.895397
Target:  5'- cGGCgagACGaucaGCgGCGACCgCAUGACCu -3'
miRNA:   3'- -CCGacaUGUg---CG-UGCUGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 22132 0.7 0.895397
Target:  5'- cGGCgaGUACGCGgacaACGACCgccagGACCu -3'
miRNA:   3'- -CCGa-CAUGUGCg---UGCUGGagua-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 5831 0.7 0.85888
Target:  5'- cGGCggugugaaGUGCgGC-CGCGACCUCGcUGGCCu -3'
miRNA:   3'- -CCGa-------CAUG-UGcGUGCUGGAGU-ACUGG- -5'
25638 5' -52.4 NC_005337.1 + 83379 0.7 0.895397
Target:  5'- cGCUGgGCGCGCGCGcccGCCgaaacCAUGuCCu -3'
miRNA:   3'- cCGACaUGUGCGUGC---UGGa----GUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 66632 0.7 0.895397
Target:  5'- uGCUGgagcACGCGCGCGACCagcugcugucCGUGAUg -3'
miRNA:   3'- cCGACa---UGUGCGUGCUGGa---------GUACUGg -5'
25638 5' -52.4 NC_005337.1 + 23293 0.7 0.88148
Target:  5'- uGGUggacGUcaACACGCACGACgUCGacgcGGCCg -3'
miRNA:   3'- -CCGa---CA--UGUGCGUGCUGgAGUa---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 53030 0.7 0.874171
Target:  5'- cGGCUGUGCgggagcugccgGCGCaACGGCCUgGUcucgGACa -3'
miRNA:   3'- -CCGACAUG-----------UGCG-UGCUGGAgUA----CUGg -5'
25638 5' -52.4 NC_005337.1 + 86944 0.7 0.865103
Target:  5'- cGGCguccaugacCACGCGCG-CCUCGaacaUGACCa -3'
miRNA:   3'- -CCGacau-----GUGCGUGCuGGAGU----ACUGG- -5'
25638 5' -52.4 NC_005337.1 + 131038 0.7 0.866636
Target:  5'- aGGC-GUGCGCGC---GCCUCcUGGCCc -3'
miRNA:   3'- -CCGaCAUGUGCGugcUGGAGuACUGG- -5'
25638 5' -52.4 NC_005337.1 + 39414 0.7 0.874171
Target:  5'- cGCUGUucgACACGCGCGggcGCCcgCucgGGCCg -3'
miRNA:   3'- cCGACA---UGUGCGUGC---UGGa-Gua-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 36615 0.7 0.874171
Target:  5'- cGGcCUGgagcGCGCGCGCGACCgagcgCAgcGACUc -3'
miRNA:   3'- -CC-GACa---UGUGCGUGCUGGa----GUa-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 73442 0.7 0.888557
Target:  5'- aGCg--ACACGCGCGugCUCAUccgcGugCa -3'
miRNA:   3'- cCGacaUGUGCGUGCugGAGUA----CugG- -5'
25638 5' -52.4 NC_005337.1 + 95511 0.69 0.925934
Target:  5'- gGGCUccacCGCGCAcCGGCUcgcCAUGACCa -3'
miRNA:   3'- -CCGAcau-GUGCGU-GCUGGa--GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 122225 0.69 0.925934
Target:  5'- cGGCgc-GCACGCcggACGACCgcacgCcgAUGACCg -3'
miRNA:   3'- -CCGacaUGUGCG---UGCUGGa----G--UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 27643 0.69 0.901996
Target:  5'- uGGCgGaGCGCGcCACGAUCUCGUcGAUa -3'
miRNA:   3'- -CCGaCaUGUGC-GUGCUGGAGUA-CUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.