miRNA display CGI


Results 81 - 100 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 24641 0.69 0.925934
Target:  5'- aGCUGguggACGCGCucGCGGCCUUccugGACa -3'
miRNA:   3'- cCGACa---UGUGCG--UGCUGGAGua--CUGg -5'
25638 5' -52.4 NC_005337.1 + 122225 0.69 0.925934
Target:  5'- cGGCgc-GCACGCcggACGACCgcacgCcgAUGACCg -3'
miRNA:   3'- -CCGacaUGUGCG---UGCUGGa----G--UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 95511 0.69 0.925934
Target:  5'- gGGCUccacCGCGCAcCGGCUcgcCAUGACCa -3'
miRNA:   3'- -CCGAcau-GUGCGU-GCUGGa--GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 91017 0.69 0.925934
Target:  5'- cGCUGaggaacaGCGCGUcaGCgGugCUCAUGGCCu -3'
miRNA:   3'- cCGACa------UGUGCG--UG-CugGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 86961 0.69 0.925934
Target:  5'- uGCUGUugACGaa-GACCUCGcgcgcgucgGACCu -3'
miRNA:   3'- cCGACAugUGCgugCUGGAGUa--------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 72283 0.69 0.914462
Target:  5'- uGCUGUACAaGUACGugUUCcUGuCCa -3'
miRNA:   3'- cCGACAUGUgCGUGCugGAGuACuGG- -5'
25638 5' -52.4 NC_005337.1 + 107091 0.69 0.908352
Target:  5'- cGCUGUGCGCGgA--GCCUCAaGACg -3'
miRNA:   3'- cCGACAUGUGCgUgcUGGAGUaCUGg -5'
25638 5' -52.4 NC_005337.1 + 24048 0.69 0.920323
Target:  5'- aGCUGUGCucggGCGaCGCGGCCgc--GGCCg -3'
miRNA:   3'- cCGACAUG----UGC-GUGCUGGaguaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 101234 0.69 0.914462
Target:  5'- aGGC-GUcCGCGCGCGugCUCGcgcugGACg -3'
miRNA:   3'- -CCGaCAuGUGCGUGCugGAGUa----CUGg -5'
25638 5' -52.4 NC_005337.1 + 3630 0.69 0.920323
Target:  5'- gGGCaccUGUGCguccaGCGcCGCGGCCUCGUcGuCCg -3'
miRNA:   3'- -CCG---ACAUG-----UGC-GUGCUGGAGUA-CuGG- -5'
25638 5' -52.4 NC_005337.1 + 117467 0.69 0.914462
Target:  5'- cGCUGUACACGCACu-UCUCGaacacgGugCu -3'
miRNA:   3'- cCGACAUGUGCGUGcuGGAGUa-----CugG- -5'
25638 5' -52.4 NC_005337.1 + 6418 0.68 0.931295
Target:  5'- -aCUGUGCACGCacagcagcGCGGCCUCcgaGuCCg -3'
miRNA:   3'- ccGACAUGUGCG--------UGCUGGAGua-CuGG- -5'
25638 5' -52.4 NC_005337.1 + 125745 0.68 0.950253
Target:  5'- aGGCgGaGCGCGCGUGACCgagaagGACCu -3'
miRNA:   3'- -CCGaCaUGUGCGUGCUGGagua--CUGG- -5'
25638 5' -52.4 NC_005337.1 + 7469 0.68 0.950253
Target:  5'- uGGCgacgaggGCGCGCACGACgUCcagGuCCa -3'
miRNA:   3'- -CCGaca----UGUGCGUGCUGgAGua-CuGG- -5'
25638 5' -52.4 NC_005337.1 + 32114 0.68 0.945884
Target:  5'- uGGCg--GCGCGCAUGuCCagCGUGuCCa -3'
miRNA:   3'- -CCGacaUGUGCGUGCuGGa-GUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 97974 0.68 0.945884
Target:  5'- ---cGUGCGCGCcauccGCGACaC-CGUGGCCg -3'
miRNA:   3'- ccgaCAUGUGCG-----UGCUG-GaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 73556 0.68 0.945884
Target:  5'- cGGUcGUcgACGgGCACuuCUUCGUGACCa -3'
miRNA:   3'- -CCGaCA--UGUgCGUGcuGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 47525 0.68 0.936406
Target:  5'- uGGCcaucGUGCcggaGCGgGACCUCGUGgGCCu -3'
miRNA:   3'- -CCGa---CAUGug--CGUgCUGGAGUAC-UGG- -5'
25638 5' -52.4 NC_005337.1 + 22523 0.68 0.941269
Target:  5'- cGGCUGUAC-CGCGagaACUUCGUGgACg -3'
miRNA:   3'- -CCGACAUGuGCGUgc-UGGAGUAC-UGg -5'
25638 5' -52.4 NC_005337.1 + 28256 0.68 0.945884
Target:  5'- cGGCaccACGCGCACGugCguggugucCGUGAUCa -3'
miRNA:   3'- -CCGacaUGUGCGUGCugGa-------GUACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.