miRNA display CGI


Results 121 - 140 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 67323 0.68 0.930243
Target:  5'- uGGCgcgcucgaucGCGCGCGCGuCCgggucCGUGGCCa -3'
miRNA:   3'- -CCGaca-------UGUGCGUGCuGGa----GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 24728 0.67 0.959762
Target:  5'- cGCUGUGCAUGCugaaGAuCCUCGcgcugcagcacgagGACCu -3'
miRNA:   3'- cCGACAUGUGCGug--CU-GGAGUa-------------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 29945 0.67 0.959762
Target:  5'- aGGUUGUcggcaccgacgggacGCACGCagagcgccgccGCGcCCUCGcgGACCg -3'
miRNA:   3'- -CCGACA---------------UGUGCG-----------UGCuGGAGUa-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 92897 0.67 0.958271
Target:  5'- cGCUGUcGCugG-ACGACCUCGaaaagugcucUGACg -3'
miRNA:   3'- cCGACA-UGugCgUGCUGGAGU----------ACUGg -5'
25638 5' -52.4 NC_005337.1 + 47798 0.67 0.958271
Target:  5'- uGCUGcGCACGUGCGACCccucgcgcuUCGacGCCg -3'
miRNA:   3'- cCGACaUGUGCGUGCUGG---------AGUacUGG- -5'
25638 5' -52.4 NC_005337.1 + 55834 0.67 0.954381
Target:  5'- gGGCgcUACGgGCGCGACUUCAc-ACCa -3'
miRNA:   3'- -CCGacAUGUgCGUGCUGGAGUacUGG- -5'
25638 5' -52.4 NC_005337.1 + 44706 0.67 0.954381
Target:  5'- cGGUggUGUGCucgACGUGCGGCCgg--GACCu -3'
miRNA:   3'- -CCG--ACAUG---UGCGUGCUGGaguaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 114963 0.67 0.961928
Target:  5'- --gUGUGCACGCGCuccGCCUaCGUGGgCg -3'
miRNA:   3'- ccgACAUGUGCGUGc--UGGA-GUACUgG- -5'
25638 5' -52.4 NC_005337.1 + 49914 0.67 0.961928
Target:  5'- uGGCUcgGUACAgGCGCGAgCgcggggacagCAcGACCa -3'
miRNA:   3'- -CCGA--CAUGUgCGUGCUgGa---------GUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 10225 0.67 0.961572
Target:  5'- aGCcGUACACGguCAUGugCUCcuugcagGUGGCCa -3'
miRNA:   3'- cCGaCAUGUGC--GUGCugGAG-------UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 1446 0.67 0.969781
Target:  5'- cGGCgccgagGUGCgcgaccacguacgccACGCACuGCCUCGUGGUCu -3'
miRNA:   3'- -CCGa-----CAUG---------------UGCGUGcUGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 77271 0.67 0.96856
Target:  5'- cGGgaGUACGUGUccACGaACC-CGUGGCCg -3'
miRNA:   3'- -CCgaCAUGUGCG--UGC-UGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 74745 0.67 0.96856
Target:  5'- uGUUcGUGCACGCcuucaucgACGACCUgGUcACCg -3'
miRNA:   3'- cCGA-CAUGUGCG--------UGCUGGAgUAcUGG- -5'
25638 5' -52.4 NC_005337.1 + 26967 0.67 0.96856
Target:  5'- cGCUcGUACACGCagaaguucACGGUCUCG-GACCc -3'
miRNA:   3'- cCGA-CAUGUGCG--------UGCUGGAGUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 64822 0.67 0.96856
Target:  5'- cGGUaccugcccaUGUGCGCGCGCGAgCUggcgCcgGACg -3'
miRNA:   3'- -CCG---------ACAUGUGCGUGCUgGA----GuaCUGg -5'
25638 5' -52.4 NC_005337.1 + 128643 0.67 0.96856
Target:  5'- uGCUGgAUAuccUGCGCGGCCggUCGUGcACCg -3'
miRNA:   3'- cCGACaUGU---GCGUGCUGG--AGUAC-UGG- -5'
25638 5' -52.4 NC_005337.1 + 80767 0.67 0.96856
Target:  5'- gGGCgcagGuUGCugGuCACG-CC-CGUGACCu -3'
miRNA:   3'- -CCGa---C-AUGugC-GUGCuGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 76317 0.67 0.965355
Target:  5'- cGCUGUugAC-CACGGg--CGUGGCCg -3'
miRNA:   3'- cCGACAugUGcGUGCUggaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 68133 0.67 0.963326
Target:  5'- gGGCcgGUggccGCGCGCGCcccuagcgggcggcgGAUCuUCGUGGCCg -3'
miRNA:   3'- -CCGa-CA----UGUGCGUG---------------CUGG-AGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 27123 0.67 0.961928
Target:  5'- cGCuUGgcCACGCGCagcagcguGACCUCcgGACa -3'
miRNA:   3'- cCG-ACauGUGCGUG--------CUGGAGuaCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.