miRNA display CGI


Results 41 - 60 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 24460 0.71 0.834355
Target:  5'- gGGCaGUACGucacgcUGCACGACCUC--GACUa -3'
miRNA:   3'- -CCGaCAUGU------GCGUGCUGGAGuaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 15859 0.71 0.842733
Target:  5'- gGGCuUGgcgGCuCGC-CGGCCUCGcucaUGACCg -3'
miRNA:   3'- -CCG-ACa--UGuGCGuGCUGGAGU----ACUGG- -5'
25638 5' -52.4 NC_005337.1 + 99468 0.71 0.842733
Target:  5'- cGC-GUGCGCGaggGCGuCUUCGUGGCCg -3'
miRNA:   3'- cCGaCAUGUGCg--UGCuGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 132949 0.71 0.85091
Target:  5'- cGCUcugcaGCGCGCugGACCUCcUGcGCCg -3'
miRNA:   3'- cCGAca---UGUGCGugCUGGAGuAC-UGG- -5'
25638 5' -52.4 NC_005337.1 + 60835 0.71 0.85091
Target:  5'- cGGaUGaGCACGCGCGuguCgCUCAUGAUCu -3'
miRNA:   3'- -CCgACaUGUGCGUGCu--G-GAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 82714 0.71 0.85091
Target:  5'- aGGCUGUcucccguCACGaaCGCGGCCUCcaGGCCc -3'
miRNA:   3'- -CCGACAu------GUGC--GUGCUGGAGuaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 79351 0.71 0.85091
Target:  5'- aGCgagGUGCACGCAUGcACgUCcGUGAUCa -3'
miRNA:   3'- cCGa--CAUGUGCGUGC-UGgAG-UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 23935 0.71 0.85091
Target:  5'- cGGCag-GCGCGCGCGACgCgcccggCcgGGCCg -3'
miRNA:   3'- -CCGacaUGUGCGUGCUG-Ga-----GuaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 11097 0.71 0.85091
Target:  5'- cGGC-GUACACGCGC-ACCUCu---CCg -3'
miRNA:   3'- -CCGaCAUGUGCGUGcUGGAGuacuGG- -5'
25638 5' -52.4 NC_005337.1 + 87902 0.71 0.854124
Target:  5'- uGGCUG-ACGCGCugGcgcgccugcgccggcGCUUCGUGcacGCCg -3'
miRNA:   3'- -CCGACaUGUGCGugC---------------UGGAGUAC---UGG- -5'
25638 5' -52.4 NC_005337.1 + 74920 0.7 0.85888
Target:  5'- cGGCUGgcggccuucGCGCGCGCGGCCgcgCGgaugcgGugCu -3'
miRNA:   3'- -CCGACa--------UGUGCGUGCUGGa--GUa-----CugG- -5'
25638 5' -52.4 NC_005337.1 + 5831 0.7 0.85888
Target:  5'- cGGCggugugaaGUGCgGC-CGCGACCUCGcUGGCCu -3'
miRNA:   3'- -CCGa-------CAUG-UGcGUGCUGGAGU-ACUGG- -5'
25638 5' -52.4 NC_005337.1 + 67330 0.7 0.85888
Target:  5'- aGGUcauggUGUACACGCccuccacgaugGCGcaGCC-CAUGACCg -3'
miRNA:   3'- -CCG-----ACAUGUGCG-----------UGC--UGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 86944 0.7 0.865103
Target:  5'- cGGCguccaugacCACGCGCG-CCUCGaacaUGACCa -3'
miRNA:   3'- -CCGacau-----GUGCGUGCuGGAGU----ACUGG- -5'
25638 5' -52.4 NC_005337.1 + 22955 0.7 0.865871
Target:  5'- aGCUGgGCACGCugGGgCUCGUccucgagGACUa -3'
miRNA:   3'- cCGACaUGUGCGugCUgGAGUA-------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 4148 0.7 0.866636
Target:  5'- aGUUGUACA-GgGCGGCCUCAacGCCg -3'
miRNA:   3'- cCGACAUGUgCgUGCUGGAGUacUGG- -5'
25638 5' -52.4 NC_005337.1 + 15866 0.7 0.866636
Target:  5'- uGCUcUGCAUGCGCGACgUgGUGAUg -3'
miRNA:   3'- cCGAcAUGUGCGUGCUGgAgUACUGg -5'
25638 5' -52.4 NC_005337.1 + 55987 0.7 0.866636
Target:  5'- uGGCU--AUGCGgGCGACCUCGcUGGCg -3'
miRNA:   3'- -CCGAcaUGUGCgUGCUGGAGU-ACUGg -5'
25638 5' -52.4 NC_005337.1 + 106120 0.7 0.866636
Target:  5'- cGCUG-ACACGCGugccguUGACCUC-UGACa -3'
miRNA:   3'- cCGACaUGUGCGU------GCUGGAGuACUGg -5'
25638 5' -52.4 NC_005337.1 + 6231 0.7 0.866636
Target:  5'- gGGCguuggGCACguGCACGGCCU--UGGCCg -3'
miRNA:   3'- -CCGaca--UGUG--CGUGCUGGAguACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.