miRNA display CGI


Results 81 - 100 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 117467 0.69 0.914462
Target:  5'- cGCUGUACACGCACu-UCUCGaacacgGugCu -3'
miRNA:   3'- cCGACAUGUGCGUGcuGGAGUa-----CugG- -5'
25638 5' -52.4 NC_005337.1 + 101234 0.69 0.914462
Target:  5'- aGGC-GUcCGCGCGCGugCUCGcgcugGACg -3'
miRNA:   3'- -CCGaCAuGUGCGUGCugGAGUa----CUGg -5'
25638 5' -52.4 NC_005337.1 + 24048 0.69 0.920323
Target:  5'- aGCUGUGCucggGCGaCGCGGCCgc--GGCCg -3'
miRNA:   3'- cCGACAUG----UGC-GUGCUGGaguaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 3630 0.69 0.920323
Target:  5'- gGGCaccUGUGCguccaGCGcCGCGGCCUCGUcGuCCg -3'
miRNA:   3'- -CCG---ACAUG-----UGC-GUGCUGGAGUA-CuGG- -5'
25638 5' -52.4 NC_005337.1 + 91017 0.69 0.925934
Target:  5'- cGCUGaggaacaGCGCGUcaGCgGugCUCAUGGCCu -3'
miRNA:   3'- cCGACa------UGUGCG--UG-CugGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 95511 0.69 0.925934
Target:  5'- gGGCUccacCGCGCAcCGGCUcgcCAUGACCa -3'
miRNA:   3'- -CCGAcau-GUGCGU-GCUGGa--GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 86961 0.69 0.925934
Target:  5'- uGCUGUugACGaa-GACCUCGcgcgcgucgGACCu -3'
miRNA:   3'- cCGACAugUGCgugCUGGAGUa--------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 122225 0.69 0.925934
Target:  5'- cGGCgc-GCACGCcggACGACCgcacgCcgAUGACCg -3'
miRNA:   3'- -CCGacaUGUGCG---UGCUGGa----G--UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 24641 0.69 0.925934
Target:  5'- aGCUGguggACGCGCucGCGGCCUUccugGACa -3'
miRNA:   3'- cCGACa---UGUGCG--UGCUGGAGua--CUGg -5'
25638 5' -52.4 NC_005337.1 + 56519 0.69 0.925934
Target:  5'- cGCgac-CGCGCcaagACGGCCUCGUGGCg -3'
miRNA:   3'- cCGacauGUGCG----UGCUGGAGUACUGg -5'
25638 5' -52.4 NC_005337.1 + 43837 0.69 0.928109
Target:  5'- uGGCcuc-CGCGCACGACCUCcUGcaguucauggucacgGCCa -3'
miRNA:   3'- -CCGacauGUGCGUGCUGGAGuAC---------------UGG- -5'
25638 5' -52.4 NC_005337.1 + 67323 0.68 0.930243
Target:  5'- uGGCgcgcucgaucGCGCGCGCGuCCgggucCGUGGCCa -3'
miRNA:   3'- -CCGaca-------UGUGCGUGCuGGa----GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 3996 0.68 0.931295
Target:  5'- cGCuUGgacgAUGCGCACGuCCUUggGGCCa -3'
miRNA:   3'- cCG-ACa---UGUGCGUGCuGGAGuaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 6418 0.68 0.931295
Target:  5'- -aCUGUGCACGCacagcagcGCGGCCUCcgaGuCCg -3'
miRNA:   3'- ccGACAUGUGCG--------UGCUGGAGua-CuGG- -5'
25638 5' -52.4 NC_005337.1 + 51061 0.68 0.931295
Target:  5'- cGGCaacGUGCucAUGCccguCGACCgCAUGACCu -3'
miRNA:   3'- -CCGa--CAUG--UGCGu---GCUGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 36194 0.68 0.935907
Target:  5'- cGCUGUACA-GCGCGGgUUCGUcguuuuuugcgccGGCCg -3'
miRNA:   3'- cCGACAUGUgCGUGCUgGAGUA-------------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 29215 0.68 0.936406
Target:  5'- cGCUGcGCAgcgcCGCGCGGCCgggCGUcGCCu -3'
miRNA:   3'- cCGACaUGU----GCGUGCUGGa--GUAcUGG- -5'
25638 5' -52.4 NC_005337.1 + 47525 0.68 0.936406
Target:  5'- uGGCcaucGUGCcggaGCGgGACCUCGUGgGCCu -3'
miRNA:   3'- -CCGa---CAUGug--CGUgCUGGAGUAC-UGG- -5'
25638 5' -52.4 NC_005337.1 + 79034 0.68 0.936406
Target:  5'- uGUUGUACACgacggaguucuuGCGCGugCUgAaGACCa -3'
miRNA:   3'- cCGACAUGUG------------CGUGCugGAgUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 60899 0.68 0.936406
Target:  5'- gGGCgugUGUGCGgGCACGGCCacggUcgGGCa -3'
miRNA:   3'- -CCG---ACAUGUgCGUGCUGGa---GuaCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.