miRNA display CGI


Results 101 - 120 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 25281 0.68 0.936406
Target:  5'- cGCUGgaguucGCGCGCACGgcgggcggGCCgcgCGUcGACCg -3'
miRNA:   3'- cCGACa-----UGUGCGUGC--------UGGa--GUA-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 118794 0.68 0.936406
Target:  5'- cGGCgccgucGUGC-CGCGCGcGCCgUCgGUGGCCa -3'
miRNA:   3'- -CCGa-----CAUGuGCGUGC-UGG-AG-UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 114589 0.68 0.941269
Target:  5'- cGCUGUACGCcaCGCGGCCgcugGACa -3'
miRNA:   3'- cCGACAUGUGc-GUGCUGGaguaCUGg -5'
25638 5' -52.4 NC_005337.1 + 22523 0.68 0.941269
Target:  5'- cGGCUGUAC-CGCGagaACUUCGUGgACg -3'
miRNA:   3'- -CCGACAUGuGCGUgc-UGGAGUAC-UGg -5'
25638 5' -52.4 NC_005337.1 + 44918 0.68 0.941269
Target:  5'- uGGCcaacgGCGC-CAuCGACCUCAUGcGCCa -3'
miRNA:   3'- -CCGaca--UGUGcGU-GCUGGAGUAC-UGG- -5'
25638 5' -52.4 NC_005337.1 + 4105 0.68 0.941269
Target:  5'- uGCUccGCGCGCACGGCCUCc-GAa- -3'
miRNA:   3'- cCGAcaUGUGCGUGCUGGAGuaCUgg -5'
25638 5' -52.4 NC_005337.1 + 73349 0.68 0.945884
Target:  5'- cGGCaGUgGCGCGuCGCGugCccgacCGUGGCCg -3'
miRNA:   3'- -CCGaCA-UGUGC-GUGCugGa----GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 103891 0.68 0.945884
Target:  5'- uGCUGgcCGCGCGCGACauggaCGUGcuCCg -3'
miRNA:   3'- cCGACauGUGCGUGCUGga---GUACu-GG- -5'
25638 5' -52.4 NC_005337.1 + 41948 0.68 0.945884
Target:  5'- cGGCUGgACgguGCGCGCGAgCagcuugUCGuUGACCg -3'
miRNA:   3'- -CCGACaUG---UGCGUGCUgG------AGU-ACUGG- -5'
25638 5' -52.4 NC_005337.1 + 32114 0.68 0.945884
Target:  5'- uGGCg--GCGCGCAUGuCCagCGUGuCCa -3'
miRNA:   3'- -CCGacaUGUGCGUGCuGGa-GUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 28256 0.68 0.945884
Target:  5'- cGGCaccACGCGCACGugCguggugucCGUGAUCa -3'
miRNA:   3'- -CCGacaUGUGCGUGCugGa-------GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 111182 0.68 0.945884
Target:  5'- uGCUGaccaccGCGCGCACGauGCCgggCAcGGCCg -3'
miRNA:   3'- cCGACa-----UGUGCGUGC--UGGa--GUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 97974 0.68 0.945884
Target:  5'- ---cGUGCGCGCcauccGCGACaC-CGUGGCCg -3'
miRNA:   3'- ccgaCAUGUGCG-----UGCUG-GaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 96337 0.68 0.945884
Target:  5'- cGCUGgcgGCGCuGCugGACUUCGcgaagcgggggcUGAUCg -3'
miRNA:   3'- cCGACa--UGUG-CGugCUGGAGU------------ACUGG- -5'
25638 5' -52.4 NC_005337.1 + 73556 0.68 0.945884
Target:  5'- cGGUcGUcgACGgGCACuuCUUCGUGACCa -3'
miRNA:   3'- -CCGaCA--UGUgCGUGcuGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 125745 0.68 0.950253
Target:  5'- aGGCgGaGCGCGCGUGACCgagaagGACCu -3'
miRNA:   3'- -CCGaCaUGUGCGUGCUGGagua--CUGG- -5'
25638 5' -52.4 NC_005337.1 + 46458 0.68 0.950253
Target:  5'- cGCgg-ACGCGUGCGACUUCcuggugguguggGUGGCCc -3'
miRNA:   3'- cCGacaUGUGCGUGCUGGAG------------UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 8362 0.68 0.950253
Target:  5'- uGCgagGCGCgGCACGAgCUCccaAUGGCCa -3'
miRNA:   3'- cCGacaUGUG-CGUGCUgGAG---UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 112093 0.68 0.950253
Target:  5'- cGCUGUGC-CGCACgGGCCc---GGCCu -3'
miRNA:   3'- cCGACAUGuGCGUG-CUGGaguaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 7469 0.68 0.950253
Target:  5'- uGGCgacgaggGCGCGCACGACgUCcagGuCCa -3'
miRNA:   3'- -CCGaca----UGUGCGUGCUGgAGua-CuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.