Results 121 - 140 of 231 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25638 | 5' | -52.4 | NC_005337.1 | + | 7469 | 0.68 | 0.950253 |
Target: 5'- uGGCgacgaggGCGCGCACGACgUCcagGuCCa -3' miRNA: 3'- -CCGaca----UGUGCGUGCUGgAGua-CuGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 66331 | 0.67 | 0.953979 |
Target: 5'- gGGCUG---GCGaCACGugCUCGUggagcgcGACCa -3' miRNA: 3'- -CCGACaugUGC-GUGCugGAGUA-------CUGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 55834 | 0.67 | 0.954381 |
Target: 5'- gGGCgcUACGgGCGCGACUUCAc-ACCa -3' miRNA: 3'- -CCGacAUGUgCGUGCUGGAGUacUGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 97038 | 0.67 | 0.954381 |
Target: 5'- cGCUGacCGCGUGCcACCUCAUcGCCa -3' miRNA: 3'- cCGACauGUGCGUGcUGGAGUAcUGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 122726 | 0.67 | 0.954381 |
Target: 5'- uGCUGUcGCACGUgcccgcggACGACCUgc-GGCCa -3' miRNA: 3'- cCGACA-UGUGCG--------UGCUGGAguaCUGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 44706 | 0.67 | 0.954381 |
Target: 5'- cGGUggUGUGCucgACGUGCGGCCgg--GACCu -3' miRNA: 3'- -CCG--ACAUG---UGCGUGCUGGaguaCUGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 113813 | 0.67 | 0.958271 |
Target: 5'- cGCUGUcaacgaguacuGCAUGCGCGuCCaCA-GACCg -3' miRNA: 3'- cCGACA-----------UGUGCGUGCuGGaGUaCUGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 10407 | 0.67 | 0.958271 |
Target: 5'- aGGCcGUACGCGcCGCGcccGCCgucCAUGcacGCCg -3' miRNA: 3'- -CCGaCAUGUGC-GUGC---UGGa--GUAC---UGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 64671 | 0.67 | 0.958271 |
Target: 5'- cGGCgaagAUGCGCACGACCgagCAgu-CCu -3' miRNA: 3'- -CCGaca-UGUGCGUGCUGGa--GUacuGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 132645 | 0.67 | 0.958271 |
Target: 5'- gGGC---GCGCGCAuCGACCUCc-GAUCg -3' miRNA: 3'- -CCGacaUGUGCGU-GCUGGAGuaCUGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 92897 | 0.67 | 0.958271 |
Target: 5'- cGCUGUcGCugG-ACGACCUCGaaaagugcucUGACg -3' miRNA: 3'- cCGACA-UGugCgUGCUGGAGU----------ACUGg -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 47798 | 0.67 | 0.958271 |
Target: 5'- uGCUGcGCACGUGCGACCccucgcgcuUCGacGCCg -3' miRNA: 3'- cCGACaUGUGCGUGCUGG---------AGUacUGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 11737 | 0.67 | 0.958271 |
Target: 5'- cGGCUGca-GCGCGCGucGCCgcgcCAgGGCCa -3' miRNA: 3'- -CCGACaugUGCGUGC--UGGa---GUaCUGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 67643 | 0.67 | 0.958271 |
Target: 5'- aGCUGguCGCGCGCGugCUCcagcACCa -3' miRNA: 3'- cCGACauGUGCGUGCugGAGuac-UGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 29945 | 0.67 | 0.959762 |
Target: 5'- aGGUUGUcggcaccgacgggacGCACGCagagcgccgccGCGcCCUCGcgGACCg -3' miRNA: 3'- -CCGACA---------------UGUGCG-----------UGCuGGAGUa-CUGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 23216 | 0.67 | 0.959762 |
Target: 5'- aGGUgac-CACGCACGAggagcuggaguacaaCCUCucgGUGACCa -3' miRNA: 3'- -CCGacauGUGCGUGCU---------------GGAG---UACUGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 24728 | 0.67 | 0.959762 |
Target: 5'- cGCUGUGCAUGCugaaGAuCCUCGcgcugcagcacgagGACCu -3' miRNA: 3'- cCGACAUGUGCGug--CU-GGAGUa-------------CUGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 108029 | 0.67 | 0.960855 |
Target: 5'- uGGCgcccaagcagaagaUGUACGacaaGCACGugCUCAUcuucGACUa -3' miRNA: 3'- -CCG--------------ACAUGUg---CGUGCugGAGUA----CUGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 10225 | 0.67 | 0.961572 |
Target: 5'- aGCcGUACACGguCAUGugCUCcuugcagGUGGCCa -3' miRNA: 3'- cCGaCAUGUGC--GUGCugGAG-------UACUGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 46223 | 0.67 | 0.961572 |
Target: 5'- aGCaGUACAUccaGCACGACCcCGUGcacgugcGCCg -3' miRNA: 3'- cCGaCAUGUG---CGUGCUGGaGUAC-------UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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